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Report for CCDS19490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19490.1 Public Mus musculus 5 Gbp8 23 108 98 CCDS HistoryNCBI Gene:76074Re-query CCDS DB by CCDS ID:19490.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19490.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031235.12 ENSMUSP00000031235.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031235.12Link to Ensembl Protein Viewer:ENSMUSP00000031235.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031235Re-query CCDS DB by Protein ID:ENSMUSP00000031235
Original member Current member EBI ENSMUST00000112718.4 ENSMUSP00000108338.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112718.4Link to Ensembl Protein Viewer:ENSMUSP00000108338.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000112718Re-query CCDS DB by Protein ID:ENSMUSP00000108338
Original member Current member NCBI NM_029509.4 NP_083785.3 Accepted alive Link to Nucleotide Sequence:NM_029509.4Link to Protein Sequence:NP_083785.3Re-query CCDS DB by Nucleotide ID:NM_029509Re-query CCDS DB by Protein ID:NP_083785Link to BLAST:NP_083785.3

Chromosomal Locations for CCDS 19490.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 105014949 105015122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105016027 105016220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105016546 105016648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105017679 105017885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105018562 105018842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105030829 105031025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105031210 105031319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105041853 105041980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105050864 105051047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGACCCAACCACAAATGGCTCCCATTTGTCTTGTGGAAAACCACAATGAACATCTGTCCGTGAACCATG
AAGCCATAGAGATTCTGGAGAAGATTTCTCAGCCAGTGGTAGTCGTGGCTATTGTTGGATTGTACCGTAC
AGGGAAGTCCTATTTGATGAACCGTCTGGCAGGACAGAATCACGGTTTCCCTCTGGGCTCCACTGTGCAG
TCTCAGACCAAGGGCATCTGGATGTGGTGCATGCCACACCCCACTAAACCAGAGCACACCCTGGTCCTCC
TGGACACCGAGGGCCTGGGGGATGTGGAAAAGGGTGATCCTAAGAACGACTTGTGGATCTTTGCCCTCAG
TGTGCTTCTGAGCAGCACCTTCATCTACAACAGCATGAACACCATCAGCCATGATTCCCTGGAGAAACTA
CATTATGTCACAGAACTCACTGAGCTGATCAGAGCAAAGTCTTCACCAAATCCTGATGGAATAAAGAATT
CCACAGAGTTTGTGAGTTTCTTTCCAGACTTTGTCTGGACTGTTCGGGATTTCATGCTAGAGCTGAAGTT
AAATGGGGAAGACATCACAAGTGATGAGTACCTGGAGAATGCCCTGAAGCTGATCCCAGGATTGGGGATT
CTAGTGACAACCTATGTAGATGCCATCAACAGTGGAGCAGTGCCTTGTGTGGATGATGCTGTGACAACTC
TGGCCCAGCGTGAGAACTCAGTAGCTGTGCAGAGGGCAGCTGACCACTACAGTGAGCAGATGGTCCAGCG
ACTGAGCCTTCCCACAGACACGCTCCAGGAGCTGCTGGATGTGCATGCAGCCTGCGAGAAGGAAGCCATG
GCTGTCTTCATGGAGCATTCCTTCAAGGACGAAAATCAGCAATTCCTGAAGAAGCTGGTGGAATTAATAG
GTGAGGCGAAAGTGCTTTTCCTGTTGAAGAATGAAGAGGCATCTGATAAATACTGCCAGGAAGAACTGGA
TCGACTTTCAAAGGATTTGATGGACAATATCTCAACATTTTCTGTTCCTGGGGGACACAGGCTCTACATG
GACATGAGAGAGAAGATTGAGCATGATTACTGGCAAGTTCCCAGGAAAGGGGTGAAGGCAAGAGAAGTCT
TCCAGAGCTTTCTTCAGTCGCAGGCCATCATTGAGAGTTCCATCCTGCAGGCAGACACAGCCCTCACTGC
TGGGCAGAAGGCCATTGCAGAGGAGCGCACCAAGAAGGAGGCAGCTGAGAAGGAGCAGGATCTGCTAAGA
CAGAAGCAGAAGGAGCAGCAGGAGTATATGGAGGCTCAAGAGAAAAGGAACAAGGAAAACATAGAGCAAC
TGAGAAGGAAGCTGGAGCAGGAGAGAGAGCAGCTCATCAAAGACCATAACATGATGGTGGAGAAGAAGCT
GAAGGAACAAAAGGCTTTGCTTGAGGAAGGATTTAAGAAGAAAGCTGAAGAAATGGACGGAGAGATACAG
CAACTGAAACATAACATCGAGGATATGAAAAAAAAACAGTGGTTCCATTTTCGATACTATTATAAGAGAA
GTTGCTTCATTTATTTTTTCTCCCATTTCAATGATTGA

Translation (525 aa):
MTQPQMAPICLVENHNEHLSVNHEAIEILEKISQPVVVVAIVGLYRTGKSYLMNRLAGQNHGFPLGSTVQ
SQTKGIWMWCMPHPTKPEHTLVLLDTEGLGDVEKGDPKNDLWIFALSVLLSSTFIYNSMNTISHDSLEKL
HYVTELTELIRAKSSPNPDGIKNSTEFVSFFPDFVWTVRDFMLELKLNGEDITSDEYLENALKLIPGLGI
LVTTYVDAINSGAVPCVDDAVTTLAQRENSVAVQRAADHYSEQMVQRLSLPTDTLQELLDVHAACEKEAM
AVFMEHSFKDENQQFLKKLVELIGEAKVLFLLKNEEASDKYCQEELDRLSKDLMDNISTFSVPGGHRLYM
DMREKIEHDYWQVPRKGVKAREVFQSFLQSQAIIESSILQADTALTAGQKAIAEERTKKEAAEKEQDLLR
QKQKEQQEYMEAQEKRNKENIEQLRRKLEQEREQLIKDHNMMVEKKLKEQKALLEEGFKKKAEEMDGEIQ
QLKHNIEDMKKKQWFHFRYYYKRSCFIYFFSHFND


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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