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Report for CCDS30287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30287.1 Public Mus musculus X Las1l 23 108 98 CCDS HistoryNCBI Gene:76130Re-query CCDS DB by CCDS ID:30287.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30287.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079987.12 ENSMUSP00000078901.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079987.12Link to Ensembl Protein Viewer:ENSMUSP00000078901.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000079987Re-query CCDS DB by Protein ID:ENSMUSP00000078901
Original member Current member NCBI NM_152822.3 NP_690035.2 Accepted alive Link to Nucleotide Sequence:NM_152822.3Link to Protein Sequence:NP_690035.2Re-query CCDS DB by Nucleotide ID:NM_152822Re-query CCDS DB by Protein ID:NP_690035Link to BLAST:NP_690035.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690035.2 759 A2BE28-2 759 100% 0 0

Chromosomal Locations for CCDS 30287.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 95935520 95935649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95937372 95937522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95940299 95940948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95946411 95946558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95946867 95947073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95947770 95947855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95950337 95950446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95951310 95951356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95951908 95952189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95953222 95953303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95955142 95955211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95955875 95956000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95956658 95956848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2280 nt):
ATGGATCGCGTGTGGCGTGCGTGGGACGGGCAGTCCTTCAAAGAGAACCAGCCTGAGTCGCCGAGTGCCA
GGGGTATCGTCGTCTCTTGGCTCAGCAGGGCTGAGTGGGAGCAAGTGACGGTTTATCTGTTCTGCGATGA
TCACAAGTTGCAGCAGTATGCGCTGAACCGAATTACAGTATGGAGGAGCAGGTTAGGCAACGAACTGCCC
CTGGCAGTGGCTTCTACTGCTGACCTGGTAAGATGCAAGCTCATCGATGCAGCCGGTACCTTGGGCACTG
ATGAACTTAGACTGCTCTATGGCATGGCATTGGTCAGGTTTGTGAATCTTATCTCAGAGAGGAAGACAAA
ATGTTCTAACCTTCCCCTCAAATACCTGGCTCAGGAGGTGAACATTCCAGACTGGATTGTTGAACTTCGC
CACAACTTGACCCACAAGAAAATGCCCCATATAAATGAGTGCCGCAGAGGTTGCTACTTTGTCCTCAACT
GGCTCCAGAAGACATACTGGAGCCGTCAACTGGAAGGCAGCCTGAAAGAAACCTGGGAGTTGGATGAGGA
CCAGCTAGATGCAGAAGATCCTGAAGAAGAGGAACGTGAAATTATTGCCGATGATGTACTTGAAGAGATA
CCAGAGCCTCAGGATGATGACAAAGATGAAGAGTTGGCTGTCGAGGATGATGCAAATACTAAAGGCAATG
AGGAGGTGGCTTCTCATCCAGAACCATCTTCAAGACACAAGGAGTTGTATGAGAAAGCGCGAGAATTGCT
GGTATCCTATGAAGAGGAACAGTTTAAGGTGCTGGAGAAACACAGGCATTTGCTTCAGGCTATTAAAGTG
TGGAATAATCTTTCCCCACGTGTACAATGTATCCTAGAAGAACTCAAGAGCATTTCATGGGAGAACAGGG
ATGCTGTGCTGGATGCTTTTCTAGATGATGGTTTCCTCATTCCTACGTTTGAGCAGTTGGCAGCTTTGCA
GATAGAGTATGAAGAAAACATCGACTTGAATGAAGTGTTGGTGCCAAAGCCCTTCTCTCAGTTCTGGCAG
CCCCTGCTCAGGGGCCTGCACTCCCAGACCTTCACGCAGGCCCTGCTAGAGAGGATGTTCTCCGAGTTGT
CTACCGTGGGGAGCACTGGGATCCGGCCTACCTACATCCTTAGATGGACCGTTGAACTGATCGTGGCCAA
CACCAAGACTGGACGGAATGCTCGGCGGTTTTCTGCAAGCCAGTGGGAAGCAAGAAAGAGCTGGAGGCTG
TTCAATTGCTCTGCCACCCTTGACTGGCCGCAGGTGATCGAGTCCTGCTTGGGCTCACCATGCTGGGCCA
GCCCTCAACTCCTTCAGGTAGTCTTCAAAGCCATGGGACAGGTCTTGCCAGATGAAGAGCAGGAGAAGCT
GCTGCGAGTCTGTTCCATTTATACTCAGAATGGAGAGAATGGCTTGGCAAAGGCGATTGAAGGTTCCTCC
TCCTCCTCCACTGGCAAAGCTCCGTACACACTGGATACCTTACATGAGGACCTACAACCACCTGGTACCA
ACTGTGAGTCCGAAGAAAGTATTCAACAGAAGGAGCAAGGCAACCTTAAGGATGTCAAGCAAGAGGAGAA
AAAGGAGAATGAGGAAGAGGAGAAGGAGGAGGAGGAGATGGAGGAGGAGGAAGAAGAGGAGGAGGAAGAA
AAGGAGGAGGAAGAGGAAGAGCAGGAGCAGGAAGAACACCAGGAGGAAGAACAGGAGGAGGAGGAGGAGG
AAGAGAACCAAAAGGTCTTTCAAGATCAGATGGAGGCAGATGTTGAGGAAAGTGATGATGTAGAAGAAGA
GGAAGAAGTAGATGATGAAGAAGAAGATGAAGATGATGACTATGATGATGATGAAGAAGAAGACAGGATG
GAAGTGGGGGCCTTCTCTCTTGCACAGGGATCCAGTGTTTTTGAGAATACTAGGACCACGTCTCGGAAGA
GAGAAGCACTGCAGGGTTCAGCATGGCAAGTAAGCTCTGAAGATGTGCGATGGGGTACATTCCCTCTAGG
CCGGCTACCAGGCCAGACTGAGGACCCAGCAGAGCTTATGCTGGATAATTATGACACCATGTATCTTTTG
GACCAACCTGTAATAGAGCACCGGCTAGAACCCCAGAAGTCCAAAAGTAGCACTCTGAGCCTATGTTGTG
GTGGCAGCAATACCAACTCTAGCAGTAGCAGCAGCAGCGGCAACATGGAGGGCCTTCTCTGGAACCAAGG
ACAAATGCATGGGCTCAAAGCTGGCCTGCAGCTCTTCTGA

Translation (759 aa):
MDRVWRAWDGQSFKENQPESPSARGIVVSWLSRAEWEQVTVYLFCDDHKLQQYALNRITVWRSRLGNELP
LAVASTADLVRCKLIDAAGTLGTDELRLLYGMALVRFVNLISERKTKCSNLPLKYLAQEVNIPDWIVELR
HNLTHKKMPHINECRRGCYFVLNWLQKTYWSRQLEGSLKETWELDEDQLDAEDPEEEEREIIADDVLEEI
PEPQDDDKDEELAVEDDANTKGNEEVASHPEPSSRHKELYEKARELLVSYEEEQFKVLEKHRHLLQAIKV
WNNLSPRVQCILEELKSISWENRDAVLDAFLDDGFLIPTFEQLAALQIEYEENIDLNEVLVPKPFSQFWQ
PLLRGLHSQTFTQALLERMFSELSTVGSTGIRPTYILRWTVELIVANTKTGRNARRFSASQWEARKSWRL
FNCSATLDWPQVIESCLGSPCWASPQLLQVVFKAMGQVLPDEEQEKLLRVCSIYTQNGENGLAKAIEGSS
SSSTGKAPYTLDTLHEDLQPPGTNCESEESIQQKEQGNLKDVKQEEKKENEEEEKEEEEMEEEEEEEEEE
KEEEEEEQEQEEHQEEEQEEEEEEENQKVFQDQMEADVEESDDVEEEEEVDDEEEDEDDDYDDDEEEDRM
EVGAFSLAQGSSVFENTRTTSRKREALQGSAWQVSSEDVRWGTFPLGRLPGQTEDPAELMLDNYDTMYLL
DQPVIEHRLEPQKSKSSTLSLCCGGSNTNSSSSSSSGNMEGLLWNQGQMHGLKAGLQLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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