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Report for CCDS82547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82547.1 Public Homo sapiens 2 TMEFF2 24 110 108 CCDS HistoryNCBI Gene:23671Re-query CCDS DB by CCDS ID:82547.1Re-query CCDS DB by GeneID:23671See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82547.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409056.3 ENSP00000386871.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409056.3Link to Ensembl Protein Viewer:ENSP00000386871.3Re-query CCDS DB by Nucleotide ID:ENST00000409056Re-query CCDS DB by Protein ID:ENSP00000386871
Original member Current member NCBI NM_001305145.1 NP_001292074.1 Accepted alive Link to Nucleotide Sequence:NM_001305145.1Link to Protein Sequence:NP_001292074.1Re-query CCDS DB by Nucleotide ID:NM_001305145Re-query CCDS DB by Protein ID:NP_001292074Link to BLAST:NP_001292074.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292074.1 175 Q9UIK5-3 175 100% 0 0

Chromosomal Locations for CCDS 82547.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 192179579 192179694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 192184354 192184483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 192191880 192191989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 192194353 192194524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGGTGCTGTGGGAGTCCCCGCGGCAGTGCAGCAGCTGGACACTTTGCGAGGGCTTTTGCTGGCTGCTGC
TGCTGCCCGTCATGCTACTCATCGTAGCCCGCCCGGTGAAGCTCGCTGCTTTCCCTACCTCCTTAAGTGA
CTGCCAAACGCCCACCGGCTGGAATTGCTCTGGTTATGATGACAGAGAAAATGATCTCTTCCTCTGTGAC
ACCAACACCTGTAAATTTGATGGGGAATGTTTAAGAATTGGAGACACTGTGACTTGCGTCTGTCAGTTCA
AGTGCAACAATGACTATGTGCCTGTGTGTGGCTCCAATGGGGAGAGCTACCAGAATGAGTGTTACCTGCG
ACAGGCTGCATGCAAACAGCAGAGTGAGATACTTGTGGTGTCAGAAGGATCATGTGCCACAGATGCAGGA
TCAGGATCTGGAGATGGAGGTAGGAGTTGCCTTTTTACATATTTGAAGATTTACTGGTGGATATTATTAT
GTATATTTACTTATGTATGTTCCATTTCAGATATTTAA

Translation (175 aa):
MVLWESPRQCSSWTLCEGFCWLLLLPVMLLIVARPVKLAAFPTSLSDCQTPTGWNCSGYDDRENDLFLCD
TNTCKFDGECLRIGDTVTCVCQFKCNNDYVPVCGSNGESYQNECYLRQAACKQQSEILVVSEGSCATDAG
SGSGDGGRSCLFTYLKIYWWILLCIFTYVCSISDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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