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Report for CCDS48521.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48521.1 Public Mus musculus 10 Slc18b1 23 108 98 CCDS HistoryNCBI Gene:76306Re-query CCDS DB by CCDS ID:48521.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48521.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119597.7 ENSMUSP00000112634.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119597.7Link to Ensembl Protein Viewer:ENSMUSP00000112634.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119597Re-query CCDS DB by Protein ID:ENSMUSP00000112634
Original member NCBI NM_183116.2 NP_898939.2 Updated not alive Link to Nucleotide Sequence:NM_183116.2Link to Protein Sequence:NP_898939.2Re-query CCDS DB by Nucleotide ID:NM_183116Re-query CCDS DB by Protein ID:NP_898939
Current member NCBI NM_183116.3 NP_898939.2 Accepted alive Link to Nucleotide Sequence:NM_183116.3Link to Protein Sequence:NP_898939.2Re-query CCDS DB by Nucleotide ID:NM_183116Re-query CCDS DB by Protein ID:NP_898939Link to BLAST:NP_898939.2

Chromosomal Locations for CCDS 48521.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 23797141 23797183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23798746 23798885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23803758 23803853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23804188 23804261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23805893 23806040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23810789 23810945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23816293 23816429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23819060 23819161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23820814 23820905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23822923 23823018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23824686 23824760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23825947 23826040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23826143 23826195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23826594 23826660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGGACGAGGCGGGCTCCCCGGCTCCTGCAGGGACAGGAGGAGGTGATGACCCTGGAGGAAGTACAAGAG
AGACATCCCGGCGACTGTCAAGAGAACAGATTTTTGTGCTGGTATCAGCAGCAAGCATGAACTTGGGTTG
CATGATGACCTATTCCATCCTTGGACCATTTTTCCCTAAGGAGGCAGAAAAGAAGGGAGCCAGCAACACC
ATGATTGGAATGATCTTCGGATGCTATGCGTTATTTGAATTGCTGGCATCTTTGGTGTTTGGAAAATACC
TTGTACACATTGGAGCCAAATTTATGTTTATAGCAGGAATGTTTGTCTCAGGAGGAGTTACAATTCTCTT
TGGTGTGTTGGATCAACTTCCGGAAGGACCGATATTCATTGCCATGTGTTTTCTGGTGAGAATAGTAGAC
GCCATAGGCTTTGGTGCGGCCATAACAGCATCGTCATCCATCCTTGCTAAGGCTTTCCCAAACAATGTGG
CTACAGTCATGGGAAGTCTTGAGGTTTTTTCTGGACTGGGGCTGGTAGCAGGCCCCCCTTTAGGTGGCCT
TTTGTATCAATCCTTTGGCTACGAGGTACCCTTTATTTTTCTGGGGTGCATAGTCCTGCTGATGATACCA
CTCAACCTATACATTTTGCCTAGTTATGAGTCCGATCCAGGGAAGCAGTCCTTCTGGAAACTTGTCACCT
TACCCAAGATGGGCCTCCTAGCCTTCGTGATCATCTCTCTCAGCTCCTGCTTCGGCTTCCTGGACCCAAC
CCTGTCTCTCTTTGTCATGGAGAAGTTCAGTCTGTCAACTGGATACGTGGGCCTGGTCTTCCTGGGTCTG
TCTCTATCCTACGCCATTTCTTCGCCGCTGTTTGGTCTACTCAGCGATAAGATGCCTACTCTAAGGAAAT
GGCTTCTGGTTTTTGGAAACTTAATTACAGCTGGGTGCTACATGCTCTTAGGACCTGTTCCTCTTCTGCA
CATCAAAAGTCAGCTCTGGCTTCTTGTGTTGGTGTTGGTTGTAAATGGCATCTCCGCTGGAATGAGCATC
ATCCCGACCTTCCCAGAGATGCTCAGCTGTGCATATGCAAATGGATTTGAAGACAGCATAAGTACGCTGG
GACTTGTATCTGGTCTTTTTGGTGCCATGTGGTCAGTTGGAGCTTTCATGGGACCTATCCTGGGCGGATT
TCTGTGTGAGAAAATTGGTTTCGAGTGGGCAGCAGCTATGCAAGGCTTATGGACTCTGCTAAGTGGTGTT
TCGATGGCCTTATTTTATCTCTGGGAGGACTCAACGGCAAGAAGAAGATCTAAAGCTCAGAACAGCCTTG
GCACAGAGGAGGAACGAGCTGCTCTCTTGCCCAATGACACCTAG

Translation (457 aa):
MDEAGSPAPAGTGGGDDPGGSTRETSRRLSREQIFVLVSAASMNLGCMMTYSILGPFFPKEAEKKGASNT
MIGMIFGCYALFELLASLVFGKYLVHIGAKFMFIAGMFVSGGVTILFGVLDQLPEGPIFIAMCFLVRIVD
AIGFGAAITASSSILAKAFPNNVATVMGSLEVFSGLGLVAGPPLGGLLYQSFGYEVPFIFLGCIVLLMIP
LNLYILPSYESDPGKQSFWKLVTLPKMGLLAFVIISLSSCFGFLDPTLSLFVMEKFSLSTGYVGLVFLGL
SLSYAISSPLFGLLSDKMPTLRKWLLVFGNLITAGCYMLLGPVPLLHIKSQLWLLVLVLVVNGISAGMSI
IPTFPEMLSCAYANGFEDSISTLGLVSGLFGAMWSVGAFMGPILGGFLCEKIGFEWAAAMQGLWTLLSGV
SMALFYLWEDSTARRRSKAQNSLGTEEERAALLPNDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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