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Report for CCDS50809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50809.1 Public Mus musculus 2 Fam209 23 108 98 CCDS HistoryNCBI Gene:76426Re-query CCDS DB by CCDS ID:50809.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50809.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029007.2 ENSMUSP00000029007.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029007.2Link to Ensembl Protein Viewer:ENSMUSP00000029007.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000029007Re-query CCDS DB by Protein ID:ENSMUSP00000029007
Original member Current member NCBI NM_029608.1 NP_083884.1 Accepted alive Link to Nucleotide Sequence:NM_029608.1Link to Protein Sequence:NP_083884.1Re-query CCDS DB by Nucleotide ID:NM_029608Re-query CCDS DB by Protein ID:NP_083884Link to BLAST:NP_083884.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083884.1 170 A2APA5 170 100% 0 0

Chromosomal Locations for CCDS 50809.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 172472593 172472841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172473956 172474219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGCGGACGCTGCTGAGATGGTGCCTGTTCTTGTCTCTGTGCGTCTCTTGTGCCTGTGCCTTCATGTTTT
CTTCGATGAGGGAGAAAACCAAGGAAAGCCCAGGGAAGGTGCCTTGCGGCGGACACTTCCGGATTAGACA
GAATCTTCCAGAGAATGCCCAAGGCTGGCTTGGGAACAAATGGCTCTGGCTTTTTGTTGCCATTATGATA
TATGTGATGCTGAAGTTTCGAGGAGATGGCGAGAATAAGGAGCAGCATCCTCCTGGCCTCCGAGGCTGCC
AGCTCCGCTCTCCACCAAAGAAAGCTCAAAATATTTCCCCCAGCAAAGACTTCACTTTCAATACTTTAAC
CCAGCTCGAGATGGAATTGGTGAAATTTGTGTCCAAGGTGCGGAACCTTAAGGTCTCCATGGCAACTAAC
AGTAACTCCAGGCAGCAGGTTCCAGAGAGCCCCACGAACCTGTACAATAATGTCACAATATATGAGATAT
GGGGGGAGGAGGACTCTGAGTGA

Translation (170 aa):
MRTLLRWCLFLSLCVSCACAFMFSSMREKTKESPGKVPCGGHFRIRQNLPENAQGWLGNKWLWLFVAIMI
YVMLKFRGDGENKEQHPPGLRGCQLRSPPKKAQNISPSKDFTFNTLTQLEMELVKFVSKVRNLKVSMATN
SNSRQQVPESPTNLYNNVTIYEIWGEEDSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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