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Report for CCDS24497.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24497.1 Public Mus musculus 11 Rps27a 23 108 98 CCDS HistoryNCBI Gene:78294Re-query CCDS DB by CCDS ID:24497.1Re-query CCDS DB by GeneID:78294See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24497.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102844.3 ENSMUSP00000099908.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102844.3Link to Ensembl Protein Viewer:ENSMUSP00000099908.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102844Re-query CCDS DB by Protein ID:ENSMUSP00000099908
Original member Current member EBI ENSMUST00000102845.10 ENSMUSP00000099909.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102845.10Link to Ensembl Protein Viewer:ENSMUSP00000099909.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102845Re-query CCDS DB by Protein ID:ENSMUSP00000099909
Original member Current member NCBI NM_001033865.1 NP_001029037.1 Accepted alive Link to Nucleotide Sequence:NM_001033865.1Link to Protein Sequence:NP_001029037.1Re-query CCDS DB by Nucleotide ID:NM_001033865Re-query CCDS DB by Protein ID:NP_001029037Link to BLAST:NP_001029037.1
Original member Current member NCBI NM_024277.2 NP_077239.1 Accepted alive Link to Nucleotide Sequence:NM_024277.2Link to Protein Sequence:NP_077239.1Re-query CCDS DB by Nucleotide ID:NM_024277Re-query CCDS DB by Protein ID:NP_077239Link to BLAST:NP_077239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001029037.1 156 P62983 156 100% 0 0
NP_077239.1 156 P62983 156 100% 0 0

Chromosomal Locations for CCDS 24497.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 29545880 29546029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29546291 29546422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29546703 29546788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29547206 29547260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 29547681 29547728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (471 nt):
ATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACTATAG
AAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGATCTTTGCTGG
TAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTCATCTGGTG
TTGAGACTTCGGGGTGGTGCTAAGAAAAGGAAGAAGAAGTCTTACACCACTCCCAAGAAGAACAAGCATA
AGAGGAAGAAGGTTAAGTTGGCTGTGCTGAAATACTATAAGGTGGATGAAAATGGCAAAATTAGCCGACT
TCGTCGAGAGTGTCCTTCTGATGAATGTGGTGCTGGAGTTTTCATGGGAAGCCACTTTGACAGGCATTAC
TGTGGCAAGTGTTGTCTGACTTACTGCTTCAACAAACCAGAAGACAAGTAG

Translation (156 aa):
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
LRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHY
CGKCCLTYCFNKPEDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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