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Report for CCDS37502.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37502.2 Public Mus musculus 17 Lmf1 23 108 98 CCDS HistoryNCBI Gene:76483Re-query CCDS DB by CCDS ID:37502.2See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 37502.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 37502.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116641.8 ENSMUSP00000112340.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116641.8Link to Ensembl Protein Viewer:ENSMUSP00000112340.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116641Re-query CCDS DB by Protein ID:ENSMUSP00000112340
Original member NCBI NM_029624.4 NP_083900.3 Updated not alive Link to Nucleotide Sequence:NM_029624.4Link to Protein Sequence:NP_083900.3Re-query CCDS DB by Nucleotide ID:NM_029624Re-query CCDS DB by Protein ID:NP_083900
Current member NCBI NM_029624.5 NP_083900.3 Accepted alive Link to Nucleotide Sequence:NM_029624.5Link to Protein Sequence:NP_083900.3Re-query CCDS DB by Nucleotide ID:NM_029624Re-query CCDS DB by Protein ID:NP_083900Link to BLAST:NP_083900.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083900.3 574 Q3U3R4-1 574 100% 0 0

Chromosomal Locations for CCDS 37502.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25579187 25579379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25585543 25585852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25588676 25588686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25612296 25612444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25631735 25631800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25645149 25645316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25654420 25654606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25655088 25655241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25655385 25655568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25656001 25656113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25662514 25662703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGCGCCCAGACAGCCTAGTAATGGCTGCGCCCGAGGGGTCGCTGAGAAAACGGAAGGTCGGGGGTGCGG
AGCACAGTCCAGCGTCGCAACCTTCTCTGGCTAGAGATCCCGCAGATTCTCCAGCTCGGCTGCACACGGG
CACCTTCTGGCTGACTAGAATCGTGCTCCTGCGGGCCCTCGCTTTCATTTACTTTGTGGCCTTTTTGGTG
GCATTCAATCAGAACAAGGCCCTCATCGGTGACCGGGGCCTGCTGCCCTGCAAACTGTACCTGAAGAATG
TCCAGGAGTACTTCCAGGGCAGCACTGGCTGGGCTGCCTGGACCTATGCACCAACCATTATGTGGTTGTT
GGACTGGTCAGACATGAACTTCAACCTGGACCTCATTGCTCTTCTTGGGCTGGGCATCTCGTCCTTTGTC
CTGGTGACCGGCTGTGCCAACATGATACTCATGACTGCCCTCTGGGCCCTCTACATGTCCCTGGTCAACG
TAGGGCAGATCTGGTATTCTTTTGGATGGGAGTCACAGCTGCTGGAAACAGGATTCCTGGGGATCTTTCT
GAGCCCTCTCTGGACACTGTCCCGCCTGCCCAAGAACACCCCCACATCCCAGATTGTCCTGTGGGGCTTC
CGCTGGCTGATCTTCAGAATCATGCTTGGAGCGGGCCTCATCAAGGTCCGCGGGGACAAGTGCTGGCTGG
ATCTGACCTGCATGGACTTCCACTATGAGACTCAGCCCGTGCCCAACCCGATAGCCTACTACCTGCACAG
GTCACCATGGTGGTTCCACCGCTTTGAGACCCTCAGCAACCACTTCGTGGAGCTTCTTGTGCCTTTCTTC
CTGTTCCTTGGACGGCGGATGCGCATTCTTCATGGAGTGCTGCAGATCCTTTTCCAGGTGATCCTCATCA
TCAGTGGGAACCTGAGCTTCCTGAACTGGCTCACCATCGTGCCCAGCCTTGCCTGCTTCGACGATGCAGC
TCTGGGATTCCTGTTTCCCTCAGGACCTCAAGGCCTAAAGAAGCAAGTCCTGGAGATTCAGAGGGAAGAT
ACACAAAGGGTCCAGCCCAAGCCAAGAGACAGAGGCTGCTTGGTGCGGCAAGTGGTCAACATCTCCCTGG
GCATCCTGGTGGCCTGGCTCAGCGTACCCGTGGTTATCAATCTGCTAAGCTCCAGGCAGATCATGAACAC
CTCCTTCAACCCGCTCAGGATCGTCAACACCTATGGGGCCTTTGGAAGTGTCACCAAAGAGCGGACTGAG
GTGATCCTGCAGGGCACAGTGAGCCCCAACGCCAGCGCACCTGATGCAGTGTGGGAAGACTATGAGTTCA
AGTGCAAACCGGGCGACCCCTGGAGGCAGCCATGCCTCATCTCGCCATACCACTACCGCCTGGACTGGCT
GATGTGGTTCGCAGCTTTCCAGACCTATGAGCAGAACGAGTGGATCCTTCATCTGGCGGGTAAGCTCCTA
GCTGGTGACTCTGAAGCCCTGGCCCTACTTGCTGTTAACCCCTTTGAGGGCAGGACTCCCCCCAGGTGGA
TCCGAGGAGAACACTACCGGTACAAGTTCAGCCTCCCCGGGGGCCAGCACGCCACCCAGGGCAAGTGGTG
GATCCGCAAGCGAATTGGTCCTTACTTCCCCCCACTCCGCCTTGAGGATCTGAAGGAATACTTTAAGACT
CGGGAGTGGCCACTACCAGAACCCCCATCTAGACACACACGCTGA

Translation (574 aa):
MRPDSLVMAAPEGSLRKRKVGGAEHSPASQPSLARDPADSPARLHTGTFWLTRIVLLRALAFIYFVAFLV
AFNQNKALIGDRGLLPCKLYLKNVQEYFQGSTGWAAWTYAPTIMWLLDWSDMNFNLDLIALLGLGISSFV
LVTGCANMILMTALWALYMSLVNVGQIWYSFGWESQLLETGFLGIFLSPLWTLSRLPKNTPTSQIVLWGF
RWLIFRIMLGAGLIKVRGDKCWLDLTCMDFHYETQPVPNPIAYYLHRSPWWFHRFETLSNHFVELLVPFF
LFLGRRMRILHGVLQILFQVILIISGNLSFLNWLTIVPSLACFDDAALGFLFPSGPQGLKKQVLEIQRED
TQRVQPKPRDRGCLVRQVVNISLGILVAWLSVPVVINLLSSRQIMNTSFNPLRIVNTYGAFGSVTKERTE
VILQGTVSPNASAPDAVWEDYEFKCKPGDPWRQPCLISPYHYRLDWLMWFAAFQTYEQNEWILHLAGKLL
AGDSEALALLAVNPFEGRTPPRWIRGEHYRYKFSLPGGQHATQGKWWIRKRIGPYFPPLRLEDLKEYFKT
REWPLPEPPSRHTR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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