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Report for CCDS39030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39030.1 Public Mus musculus 5 Nub1 23 108 98 CCDS HistoryNCBI Gene:53312Re-query CCDS DB by CCDS ID:39030.1Re-query CCDS DB by GeneID:53312See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39030.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068825.7 ENSMUSP00000070265.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068825.7Link to Ensembl Protein Viewer:ENSMUSP00000070265.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000068825Re-query CCDS DB by Protein ID:ENSMUSP00000070265
Original member Current member NCBI NM_016736.3 NP_058016.2 Accepted alive Link to Nucleotide Sequence:NM_016736.3Link to Protein Sequence:NP_058016.2Re-query CCDS DB by Nucleotide ID:NM_016736Re-query CCDS DB by Protein ID:NP_058016Link to BLAST:NP_058016.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058016.2 614 P54729 614 100% 0 0

Chromosomal Locations for CCDS 39030.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 24689394 24689510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24692807 24692974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24694700 24694761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24695520 24695590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24697005 24697187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24697332 24697423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24698665 24698771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24701350 24701533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24702377 24702484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24703419 24703571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24706438 24706584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24707768 24707863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24708683 24708860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24708989 24709167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1845 nt):
ATGGCGCAGAAGAAATATCTTCAAGCAAAACTGACTCAGTTTCTAAGGGAAGACAGAATTCAACTTTGGA
AACCTCCATATACTAAAGAAAATAAGGAAGTTGGTTTGGCCGTAAAGGACCTTGCTAAGAAGTACTCTGA
GCGGCTGGAGTGCTGTGAAAACGAAGTGGAAAACATAATCGAGGAAATCCGACGCAAAGCAATTGAGCGC
GGCACTGGGAATGAACACTACCGAACAACTGGGATCGCCACCATTGAGGTGTTCCTGCCTCCAAGGCTCC
GGAAGCACGATAAGAAAAGCTTGTTGGAGACCCGCTTGCATGTCACTGGTAGAGACCTGAGGTGTCAAAT
AGCTGAAACTTTCGGATTTCAAGAAAATTACATCAAGATCGTAATAAATAAGAAACAGCTTCAACTAGGG
AAAAGCCTTGAAGAACAAGGAGTCACTCACAATGTGAAGGCGATGGTACTGGAGCTGAAACAGTCTGAAG
AGGATGTGAGGAAAAACTTACAGCTAGAGGAAGAGGAACAGAACGAGGCCGAGCTGAAGGAGAGACGCAT
TCAGAGGACCAAACGGGGACTGGAGATCCTGGCGGAGAGAGCTGAGATGGTGGTTGATCCGGAAACGATG
CCTTACTTAGACATTGCGAACCAGACAGGCAGGTCACTCAGAATTCCCCCTGCAGAAAGAAAAGCCCTTA
TGTTAGCTATGGGATATCACGAGAAGGGCAGAGCTTTCCTGAAAAGAAAAGAGTATGGAATAGCCCTGCC
CTGCCTCCTGGACGCTGACAGATACTTCTGTGAGTGCAAAGAGCTGCTGGACACTGTGGACAACTATGCA
GTCCTCCAGCTGGACATTGTGTGGTGTTACTTCCGCCTGGAACAGCTGGAATGCCTTGATGATGCAGAGA
AAAAGCTGAACTTGGCCCAGAAATGCTTTAAAAACTGTTACGGAGAGAATCACCAGAGACTGGTCCACAT
AAAAGGAAATTGTGGGAAAGAGAAGGTGTTGTTTTTAAGACTCTACTTGCTTCAGGGAATCCAAAACTAT
CACAGTGGAAATGGAGAGGAAGCTCGGGAATATCTCAACAAGGCACGGCAGCTCTTTAAGGAGCTTTACA
TCGATCCATCAAAAGTTCACAACTTGTTACAGTTGGGATTCACTGCCCAGGAAGCACGGCTGGGCCTACG
GGCCTGCGATGGAAACGTGGACCATGCAGCCACTCACATTTCCAACCGCAGAGAGGAACTGGCCCAAATC
CGGAAGGAAGAGAAGGAGAAAAGGAGACGCCGTCTGGAAAATGTCAACACTTTGAGAGGAATGGGCTACT
CCACACAAGCTGCCAAACAAGCCCTTCACCAGGCCAGAGGCAACCTGGACGATGCCCTGAAGGTTCTCCT
CAGCAACCCCCACATGTGGTGGTTACAGGATGCAGACCCTGAAAACAATAGCCGCCAAGCAAGTCCTTCC
CAGGAAAGCATCAACCAGCTGGTGTACATGGGCTTTGACACAGTGGTGGCTGAAGCTGCACTAAGGGTGT
TTGGAGGCAATGTCCAGCTGGCAGCTCAGACCCTTGCACACCATGGAGGAAGCCTCCCACCCGACCTGCA
GTTCTCAGGAGAGGACTCCTCCCCCACACCGTCCACATCCCCATCTGACTCTGCAGGGACCTCTAGTGCC
TCGACAGATGAAGACATGGAGACGGAGGCTGTCAACGAAATCCTGGAGGACATTCCGGAGCACGAGGAGG
ACTACCTGGACTCCACGCTGGAGGATGAAGAAGTCATTATTGCTGAATACTTGTCCTACGTTGAAAGTAT
AAGTTCTGCCGCAAAGAACAACTGA

Translation (614 aa):
MAQKKYLQAKLTQFLREDRIQLWKPPYTKENKEVGLAVKDLAKKYSERLECCENEVENIIEEIRRKAIER
GTGNEHYRTTGIATIEVFLPPRLRKHDKKSLLETRLHVTGRDLRCQIAETFGFQENYIKIVINKKQLQLG
KSLEEQGVTHNVKAMVLELKQSEEDVRKNLQLEEEEQNEAELKERRIQRTKRGLEILAERAEMVVDPETM
PYLDIANQTGRSLRIPPAERKALMLAMGYHEKGRAFLKRKEYGIALPCLLDADRYFCECKELLDTVDNYA
VLQLDIVWCYFRLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEKVLFLRLYLLQGIQNY
HSGNGEEAREYLNKARQLFKELYIDPSKVHNLLQLGFTAQEARLGLRACDGNVDHAATHISNRREELAQI
RKEEKEKRRRRLENVNTLRGMGYSTQAAKQALHQARGNLDDALKVLLSNPHMWWLQDADPENNSRQASPS
QESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGSLPPDLQFSGEDSSPTPSTSPSDSAGTSSA
STDEDMETEAVNEILEDIPEHEEDYLDSTLEDEEVIIAEYLSYVESISSAAKNN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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