NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5717.1 Public Homo sapiens 7 CLDN15 24 110 108 CCDS HistoryNCBI Gene:24146Re-query CCDS DB by CCDS ID:5717.1Re-query CCDS DB by GeneID:24146See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5717.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308344.10 ENSP00000308870.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308344.10Link to Ensembl Protein Viewer:ENSP00000308870.5Re-query CCDS DB by Nucleotide ID:ENST00000308344Re-query CCDS DB by Protein ID:ENSP00000308870
Original member Current member EBI ENST00000401528.5 ENSP00000385300.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000401528.5Link to Ensembl Protein Viewer:ENSP00000385300.1Re-query CCDS DB by Nucleotide ID:ENST00000401528Re-query CCDS DB by Protein ID:ENSP00000385300
Original member Current member NCBI NM_001185080.2 NP_001172009.1 Accepted alive Link to Nucleotide Sequence:NM_001185080.2Link to Protein Sequence:NP_001172009.1Re-query CCDS DB by Nucleotide ID:NM_001185080Re-query CCDS DB by Protein ID:NP_001172009Link to BLAST:NP_001172009.1
Original member Current member NCBI NM_014343.3 NP_055158.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014343.3Link to Protein Sequence:NP_055158.1Re-query CCDS DB by Nucleotide ID:NM_014343Re-query CCDS DB by Protein ID:NP_055158Link to BLAST:NP_055158.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001172009.1 228 P56746 228 100% 0 0
NP_055158.1 228 P56746 228 100% 0 0

Chromosomal Locations for CCDS 5717.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 101232410 101232515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101232604 101232720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101232833 101232914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101234278 101234442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101237365 101237581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGTCGATGGCTGTGGAAACCTTTGGCTTCTTCATGGCAACTGTGGGGCTGCTGATGCTGGGGGTGACTC
TGCCAAACAGCTACTGGCGAGTGTCCACTGTGCACGGGAACGTCATCACCACCAACACCATCTTCGAGAA
CCTCTGGTTTAGCTGTGCCACCGACTCCCTGGGCGTCTACAACTGCTGGGAGTTCCCGTCCATGCTGGCC
CTCTCTGGGTATATTCAGGCCTGCCGGGCACTCATGATCACCGCCATCCTCCTGGGCTTCCTCGGCCTCT
TGCTAGGCATAGCGGGCCTGCGCTGCACCAACATTGGGGGCCTGGAGCTCTCCAGGAAAGCCAAGCTGGC
GGCCACCGCAGGGGCCCTCCACATTCTGGCCGGTATCTGCGGGATGGTGGCCATCTCCTGGTACGCCTTC
AACATCACCCGGGACTTCTTCGACCCCTTGTACCCCGGAACCAAGTACGAGCTGGGCCCCGCCCTCTACC
TGGGGTGGAGCGCCTCACTGATCTCCATCCTGGGTGGCCTCTGCCTCTGCTCCGCCTGCTGCTGCGGCTC
TGACGAGGACCCAGCCGCCAGCGCCCGGCGGCCCTACCAGGCTCCAGTGTCCGTGATGCCCGTCGCCACC
TCGGACCAAGAAGGCGACAGCAGCTTTGGCAAATACGGCAGAAACGCCTACGTGTAG

Translation (228 aa):
MSMAVETFGFFMATVGLLMLGVTLPNSYWRVSTVHGNVITTNTIFENLWFSCATDSLGVYNCWEFPSMLA
LSGYIQACRALMITAILLGFLGLLLGIAGLRCTNIGGLELSRKAKLAATAGALHILAGICGMVAISWYAF
NITRDFFDPLYPGTKYELGPALYLGWSASLISILGGLCLCSACCCGSDEDPAASARRPYQAPVSVMPVAT
SDQEGDSSFGKYGRNAYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH