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Report for CCDS36668.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36668.1 Public Mus musculus 13 Faf2 23 108 98 CCDS HistoryNCBI Gene:76577Re-query CCDS DB by CCDS ID:36668.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36668.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000126071.8 ENSMUSP00000121182.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126071.8Link to Ensembl Protein Viewer:ENSMUSP00000121182.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126071Re-query CCDS DB by Protein ID:ENSMUSP00000121182
Original member Current member NCBI NM_178397.3 NP_848484.2 Accepted alive Link to Nucleotide Sequence:NM_178397.3Link to Protein Sequence:NP_848484.2Re-query CCDS DB by Nucleotide ID:NM_178397Re-query CCDS DB by Protein ID:NP_848484Link to BLAST:NP_848484.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848484.2 445 Q3TDN2-1 445 100% 0 0

Chromosomal Locations for CCDS 36668.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 54621841 54621903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54638250 54638318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54641419 54641553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54645245 54645321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54648292 54648430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54649978 54650063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54650159 54650250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54652043 54652220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54655406 54655577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54656282 54656425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54660954 54661136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGCGGCGCCTGAGGAGCAGGATCTAACTCAGGAGCAGACCGAGAAGCTGCTGCAGTTTCAGGATCTGA
CTGGCATAGAGTCCATGGAGCAGTGTCGCCTTGCTTTGGAGCAGCATAACTGGAACATGGAGGCTGCTGT
CCAGGACAGACTGAATGAGCAGGAAGGTGTACCAAGTGTTTTCAATCCACCGCCAGCTCGGCCCCTACAG
GTTAATACAGCTGACCACAGGATCTACAGCTATGTTGTCTCAAGACCACAACCAAGGGGCCTGCTTGGAT
GGGGTTATTACTTGATAATGCTTCCATTCCGGTTTACCTATTACACGATACTTGATATATTTAGGTTTGC
TCTTCGTTTTATACGGCCTGACCCTCGCAGCCGGGTCACTGACCCTGTTGGGGACATTGTTTCATTTATG
CACTCTTTTGAAGAGAAATATGGGAGGGCACACCCTGTCTTCTACCAGGGAACGTACAGCCAGGCACTTA
ACGATGCCAAGCGGGAACTTCGATTTCTTTTGGTTTATCTTCATGGAGATGACCACCAGGACTCTGATGA
GTTCTGCCGCAATGCTCTCTGCGCACCTGAGGTCATCTCACTGATAAACAGCAGGATGCTTTTCTGGGCT
TGTTCTACAAACAAGCCTGAGGGGTACAGGGTGTCCCAGGCCTTACGGGAGAACACCTATCCATTCCTAG
CTATGATTATGTTGAAGGATCGGCGAATGACTGTGGTTGGAAGGCTAGAAGGCCTCATTCAACCTGATGA
CCTCATCAACCAGCTGACATTCATCATGGATGCAAACCAGACTTACCTGGTGTCAGAACGTCTAGAAAGG
GAAGAAAGGAACCAAACCCAGGTGCTGAGACAACAGCAGGATGAAGCCTACCTGGCTTCTCTCAGGGCAG
ATCAGGAGAAAGAGAGGAAGAAGAGGGAGGAGAAAGAGCGGAAACGCCGGAAGGAGGAGGAGGTGCAGCA
ACAGAAGCTGGCGGAGGAGCGAAGACGACAGAACTTGCAGGAGGAAAAGGAGAGGAAGCTGGAATGCCTG
CCCCCTGAGCCCTCCCCTGATGATCCTGAAAGTGTCAAGATCATTTTCAAGTTACCCAATGATTCCAGAG
TAGAGAGACGATTCCACTTCTCACAGTCTCTAACAGTCATCCATGACTTCTTATTCTCCTTGAAGGAAAG
CCCTGAAAAGTTTCAGATTGAAGCCAATTTTCCAAGACGGGTACTTCCCTGTGTTCCTTCAGAGGAATGG
CCCAACCCCCCAACACTGCAGGAGGCGGGACTCAGCCACACAGAAGTTCTCTTTGTCCAGGACCTGACAG
ACGAATGA

Translation (445 aa):
MAAPEEQDLTQEQTEKLLQFQDLTGIESMEQCRLALEQHNWNMEAAVQDRLNEQEGVPSVFNPPPARPLQ
VNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRFIRPDPRSRVTDPVGDIVSFM
HSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGDDHQDSDEFCRNALCAPEVISLINSRMLFWA
CSTNKPEGYRVSQALRENTYPFLAMIMLKDRRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLER
EERNQTQVLRQQQDEAYLASLRADQEKERKKREEKERKRRKEEEVQQQKLAEERRRQNLQEEKERKLECL
PPEPSPDDPESVKIIFKLPNDSRVERRFHFSQSLTVIHDFLFSLKESPEKFQIEANFPRRVLPCVPSEEW
PNPPTLQEAGLSHTEVLFVQDLTDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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