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Report for CCDS16877.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16877.2 Under review, update Mus musculus 2 Srxn1 23 108 98 CCDS HistoryNCBI Gene:76650Re-query CCDS DB by CCDS ID:16877.2See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 16877.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data and by conservation in rodents.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 16877.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041500.7 ENSMUSP00000046196.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041500.7Link to Ensembl Protein Viewer:ENSMUSP00000046196.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041500Re-query CCDS DB by Protein ID:ENSMUSP00000046196
Original member NCBI NM_029688.5 NP_083964.2 Updated not alive Link to Nucleotide Sequence:NM_029688.5Link to Protein Sequence:NP_083964.2Re-query CCDS DB by Nucleotide ID:NM_029688Re-query CCDS DB by Protein ID:NP_083964
Current member NCBI NM_029688.6 NP_083964.3 Pending alive Link to Nucleotide Sequence:NM_029688.6Link to Protein Sequence:NP_083964.3Re-query CCDS DB by Nucleotide ID:NM_029688Re-query CCDS DB by Protein ID:NP_083964Link to BLAST:NP_083964.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083964.3 136 Q9D975 136 100% 0 0

Chromosomal Locations for CCDS 16877.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 152105684 152105947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152108989 152109192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (468 nt):
ATGGTACAGCCCGGCCTGGTAAAGAGGCCGGGCGGCACTGGCCACCAAGGAAGAGGTATGGGGCTACGCG
CGGGTGGAGCGCTCCGGAGGGCGGGTGCGGGGCCCGGGGCGCCCGAGGGACAGGGACCCGGTGGCGCCCA
GGGCGGCAGCATCCACTCGGGCTGCATCGCCACGGTGCACAACGTACCAATCGCCGTGCTCATCCGGCCG
CTGCCGTCCGTGCTGGACCCGGCCAAAGTGCAGAGCCTGGTGGACACGATCCTGGCGGACCCTGACAGTG
TGCCCCCCATCGACGTCCTCTGGATCAAAGGGGCCCAGGGTGGCGACTACTACTATTCCTTTGGGGGCTG
CCACCGCTATGCAGCCTACCAGCAGCTGCAGAGAGAGACCATTCCTGCCAAGCTCGTGAGGTCCACCCTT
TCAGACCTGAGGATGTACCTGGGAGCATCCACACCAGACTTGCAATAG

Translation (155 aa):
MVQPGLVKRPGGTGHQGRGMGLRAGGALRRAGAGPGAPEGQGPGGAQGGSIHSGCIATVHNVPIAVLIRP
LPSVLDPAKVQSLVDTILADPDSVPPIDVLWIKGAQGGDYYYSFGGCHRYAAYQQLQRETIPAKLVRSTL
SDLRMYLGASTPDLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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