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Report for CCDS18775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18775.1 Public Mus musculus 4 Mtfr1l 23 108 98 CCDS HistoryNCBI Gene:76824Re-query CCDS DB by CCDS ID:18775.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102550.9 ENSMUSP00000099609.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102550.9Link to Ensembl Protein Viewer:ENSMUSP00000099609.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102550Re-query CCDS DB by Protein ID:ENSMUSP00000099609
Original member Current member EBI ENSMUST00000116279.9 ENSMUSP00000111983.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116279.9Link to Ensembl Protein Viewer:ENSMUSP00000111983.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000116279Re-query CCDS DB by Protein ID:ENSMUSP00000111983
Original member Current member NCBI NM_001256112.1 NP_001243041.1 Accepted alive Link to Nucleotide Sequence:NM_001256112.1Link to Protein Sequence:NP_001243041.1Re-query CCDS DB by Nucleotide ID:NM_001256112Re-query CCDS DB by Protein ID:NP_001243041Link to BLAST:NP_001243041.1
Original member Current member NCBI NM_001355187.1 NP_001342116.1 Accepted alive Link to Nucleotide Sequence:NM_001355187.1Link to Protein Sequence:NP_001342116.1Re-query CCDS DB by Nucleotide ID:NM_001355187Re-query CCDS DB by Protein ID:NP_001342116Link to BLAST:NP_001342116.1
Original member Current member NCBI NM_001355188.1 NP_001342117.1 Accepted alive Link to Nucleotide Sequence:NM_001355188.1Link to Protein Sequence:NP_001342117.1Re-query CCDS DB by Nucleotide ID:NM_001355188Re-query CCDS DB by Protein ID:NP_001342117Link to BLAST:NP_001342117.1
Original member Current member NCBI NM_029759.4 NP_084035.1 Accepted alive Link to Nucleotide Sequence:NM_029759.4Link to Protein Sequence:NP_084035.1Re-query CCDS DB by Nucleotide ID:NM_029759Re-query CCDS DB by Protein ID:NP_084035Link to BLAST:NP_084035.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243041.1 289 Q9CWE0-1 289 100% 0 0
NP_001342116.1 289 Q9CWE0-1 289 100% 0 0
NP_001342117.1 289 Q9CWE0-1 289 100% 0 0
NP_084035.1 289 Q9CWE0-1 289 100% 0 0

Chromosomal Locations for CCDS 18775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 134526407 134526512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134529089 134529410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134530275 134530486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134530680 134530789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134532144 134532248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 134532627 134532641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGGAAGCCAATGTGACTATCCCAATCTGGCAAAACAAGCCACATGGGGCTGCTCGAAGTGTGGTAAGAA
GAATTGGGACCAATCTCCCCCTGAAGCCCTGTCCACGGGCATCCTTTGAGACCCTGCCCAACATCTCTGA
CCTGTGTTTGAAAGATGTCCCTCCAGTCCCTACTCTGGCTGACATTGCCTGGATTGCTGCAGATGAAGAG
GAAACATATGCTCGGGTCAGGAGTGATACACGCCCTCTGAGACATACCTGGAAGCCTAGCCCTCTGATTG
TCATGCAACGTAATGCCTCAGTGCCCAACCTTCGTGGCTCTGAGGAGAGGCTCCTGGCCCTGAAGAAGCC
GGCCCTGCCTGCCCTGAGCCGCACCACTGAGCTGCAGGATGAGCTCAGCCACCTGCGCAGCCAGATCGCT
AAAATCGTGGCGGCAGACGCAGCTTCGGCTTCATTAACACCAGATTTCTTCTCTTCCGGAAGTTCGAATG
TCTCTTCGCCTTTGCCTTGCTTTGGGTCCTCCCTCCACTCTACAACTTCCTTTGTCATTAGTGACATCAC
CGAGGAGACGGAGGTGGAGGTCCCTGAGCTCCCAACCGTCCCCCTACTTTGTTCTGCCAGCCCTGAGTGT
TGCAAACCAGAACACAAAACTACCTGCAGCTCATCTGAAGAGGATGACTGCATCTCTCTGTCCAAGGCCA
GCAGCTTTGCAGACATGATGGGCATCCTGAAGGATTTTCACCGGATAAAACAGAGCCAAGACCTGAGCCG
GAGTTTACTGAAGGAAGAAGACCCTGCTGTCCTCATCTCTGAGGTCCTCAGGAGGAAGTTTGCCCTGAAG
GAAGAAGACATCAGTAGAAAAGGGAACTGA

Translation (289 aa):
MEANVTIPIWQNKPHGAARSVVRRIGTNLPLKPCPRASFETLPNISDLCLKDVPPVPTLADIAWIAADEE
ETYARVRSDTRPLRHTWKPSPLIVMQRNASVPNLRGSEERLLALKKPALPALSRTTELQDELSHLRSQIA
KIVAADAASASLTPDFFSSGSSNVSSPLPCFGSSLHSTTSFVISDITEETEVEVPELPTVPLLCSASPEC
CKPEHKTTCSSSEEDDCISLSKASSFADMMGILKDFHRIKQSQDLSRSLLKEEDPAVLISEVLRRKFALK
EEDISRKGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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