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Report for CCDS16002.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16002.1 Public Mus musculus 2 Rabgap1 23 108 98 CCDS HistoryNCBI Gene:227800Re-query CCDS DB by CCDS ID:16002.1Re-query CCDS DB by GeneID:227800See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16002.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061179.11 ENSMUSP00000061624.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061179.11Link to Ensembl Protein Viewer:ENSMUSP00000061624.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000061179Re-query CCDS DB by Protein ID:ENSMUSP00000061624
Original member Current member EBI ENSMUST00000112920.1 ENSMUSP00000108542.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112920.1Link to Ensembl Protein Viewer:ENSMUSP00000108542.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112920Re-query CCDS DB by Protein ID:ENSMUSP00000108542
Original member Current member NCBI NM_001362956.1 NP_001349885.1 Accepted alive Link to Nucleotide Sequence:NM_001362956.1Link to Protein Sequence:NP_001349885.1Re-query CCDS DB by Nucleotide ID:NM_001362956Re-query CCDS DB by Protein ID:NP_001349885Link to BLAST:NP_001349885.1
Original member Current member NCBI NM_146121.2 NP_666233.2 Accepted alive Link to Nucleotide Sequence:NM_146121.2Link to Protein Sequence:NP_666233.2Re-query CCDS DB by Nucleotide ID:NM_146121Re-query CCDS DB by Protein ID:NP_666233Link to BLAST:NP_666233.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349885.1 1064 A2AWA9-1 1064 100% 0 0
NP_666233.2 1064 A2AWA9-1 1064 100% 0 0

Chromosomal Locations for CCDS 16002.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 37469427 37469576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37472295 37472514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37473579 37473783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37475292 37475466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37483728 37483885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37487066 37487176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37487512 37487578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37489731 37489833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37491910 37492079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37495583 37495757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37502868 37502961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37508928 37509078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37532516 37532629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37537302 37537376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37540417 37540542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37541033 37541176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37542637 37542678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37543103 37543231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37555706 37555798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37556196 37556306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37560475 37560579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37561369 37561452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37561892 37561963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37563436 37563633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37564765 37564887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3195 nt):
ATGGATGACAAGGCCTCTGTTGGAAAAATCAGTGTCTCATCAGACTCAGTGTCTACTCTTAATAGTGAAG
ATTTTGTCTTGGTTTCCAGGCAAGGAGATGAGACACCATCTACAAATAATGGGAGTGATGATGAGAAGAC
GGGACTCAAGATTGTAGGAAATGGAAGTGAGCAGCAGCTTCAGAAAGAGCTAGCAGATGTGCTGATGGAT
CCTCCCATGGACGACCAGCCAGGGGAAAGGTCACAACTGGATGGTGAAGGAGATGGGCCTCTTTCTAATC
AACTCTCAGCTTCATCCACCATTAATCCTGTGCCTCTGGTAGGGCTTCCGAAACCAGAGATGAGCCTGCC
AGTGAAACCTGGACAAGGAGATTCTGAAGTATCAAGTCCTTTTACACCAGTGGCTGATGAGGATAGTGTG
GTTTTCAATAAACTAACTTACTTAGGCTGTGCTTCAGTAAATGCTCCCCGGAGTGAAGTGGAAGCCTTGA
GGATGATGTCCATCTTGAGAAGTCAGTGTCAGATTTCTCTGGATGTAACCCTCTCAGTGCCGAATGTATC
TGAAGGAACTGTGAGACTTTTAGATCCTCAAACAAACACTGAAATAGCAAACTACCCTATCTACAAAATC
CTCTTCTGTGTCAGAGGACATGATGGGACTCCTGAGAGTGACTGTTTTGCATTCACTGAAAGTCACTACA
ACGCAGAGCTCTTCAGGATACATGTCTTTCGCTGTGAAATACAAGAAGCTGTGAGCCGGATACTTTACAG
TTTTGCCACCGCCTTCCGCCGCTCTGCCAAGCAGACCCCACTCTCAGCCACAGCTGCACCACAGACTCCT
GACAGCGACATCTTTACCTTCTCTGTGTCTTTAGAAATAAAAGAAGATGATGGTAAAGGTTATTTTAGTG
CTGTTCCCAAAGACAAGGACAGGCAATGCTTTAAACTTCGACAAGGAATTGATAAGAAGATTGTTATCTG
TGTGCAGCAAACAGCTAACAAAGAACTTGCCATTGAAAGGTGCTTTGGTCTTCTCCTTAGCCCAGGAAAA
GATGTCCGAAACAGTGATATGCACTTGCTGGATTTGGAGTCTATGGGCAAAAGTTCAGATGGAAAATCAT
ATGTTATTACTGGAAGCTGGAACCCGAAATCCCCACATTTTCAAGTTGTGAATGAAGAAACTCCTAAAGA
TAAAGTGCTGTTCATGACAACAGCTGTGGATTTGGTGATAACTGAAGTACAGGAACCTGTTCGATTTCTT
CTAGAGACAAAAGTTCGAGTGTGCTCACCTAATGAAAGGTTATTCTGGCCCTTCAGCAAACGAAGCACTA
CTGAAAACTTCTTTCTGAAACTGAAGCAGATAAAGCAAAAGGAGAAAAAGAATAATGCTGACACTTTATA
TGAAGTTGTGTGTTTGGAGAGTGAGTCAGAGAGAGAGAGGAGGAAAACCACAGCCAGTCCTTCAGTTCGC
CTGCCACAGTCTGGATCCCAGAGCTCCATGATCCCCTCTCCCCCAGAAGATGATGAAGAAGAAGATAATG
ATGAACCTCTCTTGAGTGGATTTGGGGATGTATCCAAAGAATGTGCAGAAAAAATTCTTGAAACATGGGG
AGAACTGCTGTCAAAATGGCATCTCAACTTGAGTGTGAGACCGAAGCAGTTGTCATCCTTAGTGAGAAGT
GGTGTTCCTGAAGCTCTTCGTGGAGAAGTCTGGCAGCTGCTAGCAGGCTGCCACAACAACGATCACTTAG
TAGAAAAGTACCGAATTCTCATCACAAAGGAGTCTCCTCAAGACAGTGCTATCACCAGAGATATTAACCG
CACATTTCCAGCTCATGACTACTTCAAGGACACAGGAGGAGATGGACAAGATTCTTTATATAAAATATGC
AAGGCATATTCTGTGTATGATGAAGAGATTGGTTACTGCCAGGGCCAGTCCTTCCTCGCAGCTGTACTGC
TTCTCCACATGCCCGAAGAACAGGCATTCAGTGTTCTGGTCAAGATCATGTTTGACTATGGTCTCAGGGA
ACTTTTCAAACAAAATTTTGAAGATCTTCATTGCAAGTTCTACCAGTTGGAGCGCCTTATGCAGGAATAC
ATTCCTGACCTGTACAACCACTTCCTGGATATCAGCCTTGAAGCACACATGTACGCCTCCCAGTGGTTCC
TTACACTTTTCACTGCAAAATTCCCTCTCTACATGGTCTTCCATATCATCGACCTGCTCTTATGTGAGGG
AATAAGTGTCATCTTTAATGTCGCCCTTGGATTACTAAAGACTTCCAAGGATGACTTGCTGTTGACAGAC
TTTGAGGGTGCCTTGAAGTTCTTCAGGGTTCAGCTCCCTAAAAGATACCGCTCAGAAGAAAATGCAAAGA
GGCTCATGGAGCTTGCCTGTAACACAAAGATTAGCCAGAAGAAGCTGAAGAAGTTTGAAAAAGAGTACCA
TACCATGAGGGAGCAGCAGGCCCAACAGGAAGACCCCATCGAGCGATTTGAGCGGGAAAATAGGCGGCTG
CAAGAAGCTAACATGAGGTTGGAACAGGAAAACGATGACTTAGCTCATGAACTAGTCACCAGCAAAATTG
CATTGCGGAAGGACCTGGATAATGCAGAGGAAAAGGCAGATGCATTGAATAAGGAGCTGCTGATGACCAA
GCAGAAGCTGATTGATGCAGAAGACGAGAAGAGGAGGTTAGAAGAGGAGTCTGCACAGTTAAAGGAAATG
TGCCGCCGGGAACTTGACAAGGCAGAATCAGAGATTAAAAAAAACAGCTCTATCATTGGTGACTATAAGC
AGATTTGTTCTCAATTGAGTGAAAGACTGGAAAAGCAACAGACAGCCAATAAAGTGGAAATTGAGAAAAT
CCGGCAAAAGGTAGATGACTGTGACCGCTGCCGAGACTTCTTCAACAAAGAAGGGCGAGTGAAGGGTATC
AGCTCAGCCAAGGGAGTTTCAGATGAGGACACAGATGAAGAAAAAGAGACACTCAAGAACCAGCTTCGGG
AGATGGAGCTAGAGCTGGCACAAACCAAACTGCAGCTGGTAGAAGCTGAATGCAAGATCCAGGACTTGGA
ACACCACTTGGGCCTTGCCCTCAGTGAGGTGCAGGCAGCCAAGAAGACCTGGTTTAACCGAACACTGAGC
TCCATAAAGACAGCAACTGGTGTTCAAGGGAAAGAGACATGTTGA

Translation (1064 aa):
MDDKASVGKISVSSDSVSTLNSEDFVLVSRQGDETPSTNNGSDDEKTGLKIVGNGSEQQLQKELADVLMD
PPMDDQPGERSQLDGEGDGPLSNQLSASSTINPVPLVGLPKPEMSLPVKPGQGDSEVSSPFTPVADEDSV
VFNKLTYLGCASVNAPRSEVEALRMMSILRSQCQISLDVTLSVPNVSEGTVRLLDPQTNTEIANYPIYKI
LFCVRGHDGTPESDCFAFTESHYNAELFRIHVFRCEIQEAVSRILYSFATAFRRSAKQTPLSATAAPQTP
DSDIFTFSVSLEIKEDDGKGYFSAVPKDKDRQCFKLRQGIDKKIVICVQQTANKELAIERCFGLLLSPGK
DVRNSDMHLLDLESMGKSSDGKSYVITGSWNPKSPHFQVVNEETPKDKVLFMTTAVDLVITEVQEPVRFL
LETKVRVCSPNERLFWPFSKRSTTENFFLKLKQIKQKEKKNNADTLYEVVCLESESERERRKTTASPSVR
LPQSGSQSSMIPSPPEDDEEEDNDEPLLSGFGDVSKECAEKILETWGELLSKWHLNLSVRPKQLSSLVRS
GVPEALRGEVWQLLAGCHNNDHLVEKYRILITKESPQDSAITRDINRTFPAHDYFKDTGGDGQDSLYKIC
KAYSVYDEEIGYCQGQSFLAAVLLLHMPEEQAFSVLVKIMFDYGLRELFKQNFEDLHCKFYQLERLMQEY
IPDLYNHFLDISLEAHMYASQWFLTLFTAKFPLYMVFHIIDLLLCEGISVIFNVALGLLKTSKDDLLLTD
FEGALKFFRVQLPKRYRSEENAKRLMELACNTKISQKKLKKFEKEYHTMREQQAQQEDPIERFERENRRL
QEANMRLEQENDDLAHELVTSKIALRKDLDNAEEKADALNKELLMTKQKLIDAEDEKRRLEEESAQLKEM
CRRELDKAESEIKKNSSIIGDYKQICSQLSERLEKQQTANKVEIEKIRQKVDDCDRCRDFFNKEGRVKGI
SSAKGVSDEDTDEEKETLKNQLREMELELAQTKLQLVEAECKIQDLEHHLGLALSEVQAAKKTWFNRTLS
SIKTATGVQGKETC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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