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Report for CCDS24573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24573.1 Public Mus musculus 11 Cyfip2 23 108 98 CCDS HistoryNCBI Gene:76884Re-query CCDS DB by CCDS ID:24573.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24573.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093165.11 ENSMUSP00000090853.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093165.11Link to Ensembl Protein Viewer:ENSMUSP00000090853.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000093165Re-query CCDS DB by Protein ID:ENSMUSP00000090853
Original member Current member EBI ENSMUST00000093166.10 ENSMUSP00000090854.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093166.10Link to Ensembl Protein Viewer:ENSMUSP00000090854.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000093166Re-query CCDS DB by Protein ID:ENSMUSP00000090854
Original member Current member EBI ENSMUST00000165599.8 ENSMUSP00000127586.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165599.8Link to Ensembl Protein Viewer:ENSMUSP00000127586.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000165599Re-query CCDS DB by Protein ID:ENSMUSP00000127586
Original member Current member NCBI NM_001252459.1 NP_001239388.1 Accepted alive Link to Nucleotide Sequence:NM_001252459.1Link to Protein Sequence:NP_001239388.1Re-query CCDS DB by Nucleotide ID:NM_001252459Re-query CCDS DB by Protein ID:NP_001239388Link to BLAST:NP_001239388.1
Original member Current member NCBI NM_001252460.1 NP_001239389.1 Accepted alive Link to Nucleotide Sequence:NM_001252460.1Link to Protein Sequence:NP_001239389.1Re-query CCDS DB by Nucleotide ID:NM_001252460Re-query CCDS DB by Protein ID:NP_001239389Link to BLAST:NP_001239389.1
Original member Current member NCBI NM_133769.3 NP_598530.2 Accepted alive Link to Nucleotide Sequence:NM_133769.3Link to Protein Sequence:NP_598530.2Re-query CCDS DB by Nucleotide ID:NM_133769Re-query CCDS DB by Protein ID:NP_598530Link to BLAST:NP_598530.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239388.1 1253 Q5SQX6 1253 100% 0 0
NP_001239389.1 1253 Q5SQX6 1253 100% 0 0
NP_598530.2 1253 Q5SQX6 1253 100% 0 0

Chromosomal Locations for CCDS 24573.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46196300 46196467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46198991 46199138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46200646 46200884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46207387 46207481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46208288 46208360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46221336 46221466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46222610 46222700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46224062 46224205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46240004 46240091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46242287 46242486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46247559 46247678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46249730 46249838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46252604 46252680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46253947 46254043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46254510 46254666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46257549 46257702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46260800 46260947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46261437 46261603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46265904 46266029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46266710 46266829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46270552 46270669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46272609 46272700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46274638 46274742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46276779 46276907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46278059 46278155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46279952 46280133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46284157 46284258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46286067 46286144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46289632 46289721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46291513 46291629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3762 nt):
ATGACCACCCACGTCACTTTGGAAGATGCCCTGTCCAACGTGGACCTGCTGGAGGAACTGCCCCTCCCAG
ACCAGCAGCCATGTATCGAGCCCCCGCCATCCTCCATCATGTACCAGGCTAACTTTGACACGAACTTCGA
GGACAGGAATGCATTTGTCACGGGCATTGCAAGGTACATTGAGCAGGCAACGGTCCACTCCAGCATGAAT
GAAATGCTGGAGGAGGGCCACGACTATGCAGTCATGCTGTACACCTGGCGCAGCTGCTCCCGGGCCATCC
CGCAGGTGAAGTGCAATGAGCAGCCCAATCGGGTCGAGATCTACGAGAAGACGGTGGAGGTGCTGGAGCC
AGAGGTCACCAAGCTCATGAAGTTCATGTACTTTCAGCGCAAGGCCATCGAGCGCTTCTGTAGCGAGGTG
AAGCGGCTGTGTCACGCTGAGCGCAGGAAGGACTTTGTCTCTGAGGCCTACCTGCTGACGCTGGGCAAGT
TCATCAACATGTTCGCGGTCTTGGACGAGCTAAAGAACATGAAGTGCAGTGTCAAGAATGACCACTCTGC
CTACAAGAGAGCAGCACAGTTCCTAAGGAAGATGGCGGACCCCCAGTCCATCCAGGAATCTCAGAACCTG
TCCATGTTCCTGGCCAATCACAACAGGATCACCCAGTGTCTTCACCAGCAACTGGAAGTGATCCCGGGCT
ATGAGGAGCTGCTGGCAGACATTGTCAACATCTGTGTTGATTACTATGAGAATAAGATGTACCTGACGCC
CAGTGAAAAGCACATGTTGCTCAAGGTGATGGGCTTTGGTCTCTATCTGATGGACGGAAATGTCAGTAAC
ATTTACAAACTGGATGCCAAGAAGAGAATCAACCTTAGCAAAATTGATAAGTTTTTTAAGCAGCTGCAGG
TGGTACCCCTTTTCGGCGACATGCAGATAGAGCTGGCCAGATACATTAAGACCAGTGCTCACTATGAAGA
GAACAAGTCCAAGTGGACATGCACTCAGAGCAGCATCAGCCCCCAGTACAACATCTGTGAGCAGATGGTT
CAGATCCGGGATGATCACATCCGCTTCATCTCTGAGCTGGCTCGCTACAGCAACAGCGAGGTGGTGACAG
GCTCAGGGCTGGACAGCCAGAAGTCGGATGAAGAGTACCGGGAGCTTTTTGACCTGGCCCTGCGAGGCCT
GCAGCTTCTATCCAAGTGGAGTGCCCATGTCATGGAGGTGTACTCTTGGAAGCTGGTTCACCCCACAGAC
AAGTTCTGCAACAAGGACTGCCCGGGCACCGCGGAAGAGTACGAGAGAGCCACGCGCTACAATTATACCA
GCGAGGAGAAGTTTGCCTTTGTGGAGGTGATTGCCATGATCAAGGGTTTGCAGGTGCTCATGGGAAGGAT
GGAGAGTGTCTTCAACCAGGCCATCCGCAACACTATCTACGCAGCCCTGCAGGATTTCGCCCAGGTGACG
CTGCGGGAGCCGTTGCGGCAAGCAGTTCGAAAGAAAAAGAATGTCCTTATCAGCGTTCTGCAAGCAATTC
GAAAGACCATCTGTGACTGGGAGGGAGGCCGAGAGCCCCCCAATGACCCATGCTTAAGAGGGGAGAAGGA
CCCCAAAGGTGGCTTTGACATCAAGGTGCCCCGCCGTGCTGTGGGTCCATCCAGCACACAGCTGTACATG
GTGCGCACCATGCTTGAGTCACTCATCGCAGACAAGAGCGGCTCCAAGAAGACGCTCAGAAGCAGCCTGG
ATGGCCCTATCGTCCTTGCCATAGAGGACTTCCACAAGCAGTCCTTCTTTTTCACACACCTGCTTAACAT
CAGCGAGGCTCTTCAGCAGTGCTGTGACCTCTCCCAGCTCTGGTTCCGAGAATTCTTCCTGGAGTTGACC
ATGGGCCGGCGAATCCAGTTCCCGATTGAGATGTCCATGCCCTGGATTCTAACGGACCATATTCTGGAAA
CCAAAGAACCTTCCATGATGGAGTATGTCCTCTACCCCTTGGATCTGTACAACGACAGCGCCTACTATGC
CCTCACCAAATTCAAAAAGCAGTTCCTGTATGACGAGATCGAAGCCGAGGTAAACCTGTGTTTTGATCAG
TTTGTCTACAAGCTGGCTGACCAGATCTTCGCCTACTACAAAGCCATGGCCGGCAGTGTCCTGCTGGATA
AACGTTTTAGAGCTGAGTGTAAGAACTATGGGGTGATCATACCGTACCCGCCATCCAACCGCTACGAGAC
ACTGCTGAAGCAGAGACATGTCCAGCTGTTGGGGAGATCAATTGACTTGAACAGACTCATCACCCAGCGG
ATCTCTGCTGCCATGTACAAGTCCTTGGACCAGGCCATCAGCCGCTTTGAGAGTGAAGACCTGACCTCCA
TTGTGGAGCTGGAGTGGCTGCTGGAGATTAACCGACTCACACACCGACTCCTCTGTAAGCACATGACGCT
AGACAGCTTCGATGCCATGTTCCGAGAAGCCAATCATAACGTGTCTGCCCCTTACGGCCGCATCACCCTG
CATGTCTTCTGGGAGCTGAACTTTGACTTTCTCCCCAACTACTGCTATAATGGATCCACAAACCGTTTTG
TCCGAACTGCCATCCCTTTCACCCAAGAACCACAACGGGATAAGCCCGCCAATGTCCAGCCTTATTACCT
CTATGGATCCAAGCCTCTCAACATTGCCTACAGCCACATCTATAGCTCCTACCGGAACTTTGTGGGGCCC
CCTCACTTCAAGACCATCTGCAGACTGTTGGGCTACCAGGGCATCGCTGTGGTCATGGAGGAACTGCTGA
AAATCGTCAAGAGCTTGCTCCAAGGCACCATCCTGCAGTACGTGAAGACGCTCATAGAGGTGATGCCGAA
AATCTGTCGTTTGCCTCGGCACGAGTACGGCTCTCCAGGAATCCTGGAGTTCTTCCACCACCAACTGAAG
GACATCATCGAGTATGCAGAACTCAAAACAGACGTGTTCCAGAGCCTCCGAGAGGTGGGCAACGCCATCC
TGTTCTGCCTCCTCATAGAGCAAGCTCTGTCTCAGGAGGAAGTCTGTGATTTGCTCCATGCTGCACCCTT
CCAAAACATTCTGCCCCGAGTCTACATCAAAGAGGGGGAGCGCCTGGAAGTCCGGATGAAGCGCCTCGAG
GCCAAGTACGCCCCACTTCACCTGGTTCCCCTGATAGAGCGGCTGGGGACGCCTCAGCAAATCGCCATCG
CTCGGGAGGGTGACCTGCTGACCAAGGAGCGGCTCTGCTGCGGCCTGTCCATGTTTGAGGTCATCCTGAC
CCGAATCCGGAGCTACCTGCAGGACCCCATCTGGAGGGGCCCGCCACCCACCAATGGCGTCATGCATGTG
GATGAGTGTGTGGAGTTTCACCGGCTGTGGAGTGCCATGCAGTTTGTCTACTGTATCCCTGTGGGGACCA
ACGAGTTCACAGCTGAGCAGTGCTTCGGTGACGGCTTGAACTGGGCCGGCTGCTCCATCATTGTCTTGCT
GGGCCAGCAGCGGCGCTTTGACCTGTTTGACTTCTGTTATCATCTGCTGAAGGTGCAGAGGCAGGACGGG
AAGGATGAGATCATTAAGAATGTGCCTCTGAAGAAGATGGCTGACCGCATCAGGAAGTACCAGATCTTGA
ACAATGAGGTTTTTGCCATCCTGAACAAGTACATGAAGTCTGTAGAGACAGACAGTTCCACCGTAGAGCA
TGTGCGCTGCTTCCAGCCCCCAATCCACCAGTCATTGGCCACCACCTGCTAG

Translation (1253 aa):
MTTHVTLEDALSNVDLLEELPLPDQQPCIEPPPSSIMYQANFDTNFEDRNAFVTGIARYIEQATVHSSMN
EMLEEGHDYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVTKLMKFMYFQRKAIERFCSEV
KRLCHAERRKDFVSEAYLLTLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQNL
SMFLANHNRITQCLHQQLEVIPGYEELLADIVNICVDYYENKMYLTPSEKHMLLKVMGFGLYLMDGNVSN
IYKLDAKKRINLSKIDKFFKQLQVVPLFGDMQIELARYIKTSAHYEENKSKWTCTQSSISPQYNICEQMV
QIRDDHIRFISELARYSNSEVVTGSGLDSQKSDEEYRELFDLALRGLQLLSKWSAHVMEVYSWKLVHPTD
KFCNKDCPGTAEEYERATRYNYTSEEKFAFVEVIAMIKGLQVLMGRMESVFNQAIRNTIYAALQDFAQVT
LREPLRQAVRKKKNVLISVLQAIRKTICDWEGGREPPNDPCLRGEKDPKGGFDIKVPRRAVGPSSTQLYM
VRTMLESLIADKSGSKKTLRSSLDGPIVLAIEDFHKQSFFFTHLLNISEALQQCCDLSQLWFREFFLELT
MGRRIQFPIEMSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQ
FVYKLADQIFAYYKAMAGSVLLDKRFRAECKNYGVIIPYPPSNRYETLLKQRHVQLLGRSIDLNRLITQR
ISAAMYKSLDQAISRFESEDLTSIVELEWLLEINRLTHRLLCKHMTLDSFDAMFREANHNVSAPYGRITL
HVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQEPQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGP
PHFKTICRLLGYQGIAVVMEELLKIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQLK
DIIEYAELKTDVFQSLREVGNAILFCLLIEQALSQEEVCDLLHAAPFQNILPRVYIKEGERLEVRMKRLE
AKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRSYLQDPIWRGPPPTNGVMHV
DECVEFHRLWSAMQFVYCIPVGTNEFTAEQCFGDGLNWAGCSIIVLLGQQRRFDLFDFCYHLLKVQRQDG
KDEIIKNVPLKKMADRIRKYQILNNEVFAILNKYMKSVETDSSTVEHVRCFQPPIHQSLATTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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