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Report for CCDS32638.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32638.1 Public Homo sapiens 17 PCGF2 24 110 108 CCDS HistoryNCBI Gene:7703Re-query CCDS DB by CCDS ID:32638.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32638.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000611883.4 ENSP00000478970.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611883.4Link to Ensembl Protein Viewer:ENSP00000478970.1Re-query CCDS DB by Nucleotide ID:ENST00000611883Re-query CCDS DB by Protein ID:ENSP00000478970
Original member Current member EBI ENST00000616199.4 ENSP00000482063.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616199.4Link to Ensembl Protein Viewer:ENSP00000482063.1Re-query CCDS DB by Nucleotide ID:ENST00000616199Re-query CCDS DB by Protein ID:ENSP00000482063
Original member Current member EBI ENST00000620225.5 ENSP00000482815.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000620225.5Link to Ensembl Protein Viewer:ENSP00000482815.1Re-query CCDS DB by Nucleotide ID:ENST00000620225Re-query CCDS DB by Protein ID:ENSP00000482815
Original member Current member NCBI NM_001369614.1 NP_001356543.1 Accepted alive Link to Nucleotide Sequence:NM_001369614.1Link to Protein Sequence:NP_001356543.1Re-query CCDS DB by Nucleotide ID:NM_001369614Re-query CCDS DB by Protein ID:NP_001356543Link to BLAST:NP_001356543.1
Original member Current member NCBI NM_001369615.1 NP_001356544.1 Accepted alive Link to Nucleotide Sequence:NM_001369615.1Link to Protein Sequence:NP_001356544.1Re-query CCDS DB by Nucleotide ID:NM_001369615Re-query CCDS DB by Protein ID:NP_001356544Link to BLAST:NP_001356544.1
Original member Current member NCBI NM_007144.3 NP_009075.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007144.3Link to Protein Sequence:NP_009075.1Re-query CCDS DB by Nucleotide ID:NM_007144Re-query CCDS DB by Protein ID:NP_009075Link to BLAST:NP_009075.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356543.1 344 P35227 344 100% 0 0
NP_001356544.1 344 P35227 344 100% 0 0
NP_009075.1 344 P35227 344 100% 0 0

Chromosomal Locations for CCDS 32638.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 38735223 38735600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38736090 38736170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38738353 38738448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38738541 38738595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38738753 38738861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38739068 38739118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38739198 38739253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38739586 38739682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38740291 38740402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGCATCGGACTACACGGATCAAAATCACAGAGCTGAACCCCCACCTCATGTGTGCCCTCTGCGGGGGGT
ACTTCATCGACGCCACCACTATCGTGGAGTGCCTGCATTCCTTCTGCAAAACCTGCATCGTGCGCTACCT
GGAGACCAACAAATACTGCCCCATGTGTGACGTGCAGGTCCATAAAACCCGGCCGCTGCTGAGCATCAGG
TCTGACAAAACACTTCAAGACATTGTCTACAAATTGGTCCCTGGGCTTTTTAAAGATGAGATGAAACGGC
GGCGGGATTTCTATGCAGCGTACCCCCTGACGGAGGTCCCCAACGGCTCCAATGAGGACCGCGGCGAGGT
CTTGGAGCAGGAGAAGGGGGCTCTGAGTGATGATGAGATTGTCAGCCTCTCCATCGAATTCTACGAAGGT
GCCAGGGACCGGGACGAGAAGAAGGGCCCCCTGGAGAATGGGGATGGGGACAAAGAGAAAACAGGGGTGC
GCTTCCTGCGATGCCCAGCAGCCATGACCGTCATGCATCTTGCCAAGTTTCTCCGCAACAAGATGGATGT
GCCCAGCAAGTACAAGGTGGAGGTTCTGTACGAGGACGAGCCACTGAAGGAATACTACACCCTCATGGAC
ATCGCCTACATCTACCCCTGGCGGCGGAACGGGCCTCTCCCCCTCAAGTACCGTGTCCAGCCAGCCTGCA
AGCGGCTCACCCTAGCCACGGTGCCCACCCCCTCCGAGGGCACCAACACCAGCGGGGCGTCCGAGTGTGA
GTCAGTCAGCGACAAGGCTCCCAGCCCTGCCACCCTGCCAGCCACCTCCTCCTCCCTGCCCAGCCCAGCC
ACCCCATCCCATGGCTCTCCCAGTTCCCATGGGCCTCCAGCCACCCACCCTACCTCCCCCACTCCCCCTT
CGACAGCCAGTGGGGCCACCACAGCTGCCAACGGGGGTAGCTTGAACTGCCTGCAGACACCATCCTCCAC
CAGCAGGGGGCGCAAGATGACTGTCAACGGCGCTCCCGTGCCCCCCTTAACTTGA

Translation (344 aa):
MHRTTRIKITELNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLETNKYCPMCDVQVHKTRPLLSIR
SDKTLQDIVYKLVPGLFKDEMKRRRDFYAAYPLTEVPNGSNEDRGEVLEQEKGALSDDEIVSLSIEFYEG
ARDRDEKKGPLENGDGDKEKTGVRFLRCPAAMTVMHLAKFLRNKMDVPSKYKVEVLYEDEPLKEYYTLMD
IAYIYPWRRNGPLPLKYRVQPACKRLTLATVPTPSEGTNTSGASECESVSDKAPSPATLPATSSSLPSPA
TPSHGSPSSHGPPATHPTSPTPPSTASGATTAANGGSLNCLQTPSSTSRGRKMTVNGAPVPPLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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