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Report for CCDS21821.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21821.1 Public Mus musculus 7 Kdm8 23 108 98 CCDS HistoryNCBI Gene:77035Re-query CCDS DB by CCDS ID:21821.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21821.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033010.8 ENSMUSP00000033010.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033010.8Link to Ensembl Protein Viewer:ENSMUSP00000033010.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000033010Re-query CCDS DB by Protein ID:ENSMUSP00000033010
Original member Current member NCBI NM_029842.5 NP_084118.1 Accepted alive Link to Nucleotide Sequence:NM_029842.5Link to Protein Sequence:NP_084118.1Re-query CCDS DB by Nucleotide ID:NM_029842Re-query CCDS DB by Protein ID:NP_084118Link to BLAST:NP_084118.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084118.1 414 Q9CXT6 414 100% 0 0

Chromosomal Locations for CCDS 21821.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 125452237 125452728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125455091 125455257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125456433 125456565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125456964 125457008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125459875 125460024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125460915 125461007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125461087 125461251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGTCAGAGGACACCACAGAGCCCCTGGTGGGGTCCAGCACCCTCTGGAAGGAGCTCAGGACGCTCCTGC
CTGACAAAGAGGAGGAGCTGAAGCTGGACCTCGGTGAGAAGGTGGACAGGAGCGTGGCTGCGCTTTTGCG
GCAGGCTGTGGGTCTATTCTACGCGGGCCATTGGCAGGGGTGCCTGCAGGCCAGTGAGGCCGTCCTAGAC
TACTCCTGGGAAAAGCTCAACACTGGTCCCTGGAGAGATGTAGACAAGGAGTGGCGCCGGGTATATTCCT
TCGGCTGCCTCCTGAAGGCCCTGTGCCTGTGCCAGGCACCACAGAAGGCCACTACTGTGGTGGAAGCACT
GCGGGTGTGTGACATGGGCCTGTTGATGGGGGCAGCCATCCTCGAGGACATTCTTCTCAAAGTTGTCGCA
GTCCTCCAGACACACCAGCTCCCAGGAAAGCAGCCTGCCCGCGGCCCCCACCAGGATCAGCCTGCCACCA
AGAAGGCAAAGTGTGACGCCAGCCCAGCTCCTGATGTCATGTTAGAGCGGATGGTACCCAGGCTCCGCTG
CCCACCTCTGCAGTACTTCAAGCAGCATTTTCTAGTTCCTGGGAGGCCTGTGATCTTGGAAGGTGTGGCC
GACCACTGGCCGTGCATGAAGAAGTGGAGTCTGCAGTACATCCAGGAGATTGCTGGCTGCCGCACCGTCC
CCGTGGAAGTGGGCTCAAGGTACACAGATGAAGACTGGTCCCAGACTCTCATGACAGTCGATGAGTTCAT
CCAGAAGTTCATCCTGAGCGAGGCAAAGGATGTCGGGTACCTTGCTCAGCACCAGCTCTTCGACCAGATC
CCAGAGTTGAAGCGGGACATCAGCATCCCTGATTACTGTTGCCTGGGCAATGGAGAAGAGGAAGAGATCA
CTATCAATGCCTGGTTTGGTCCACAAGGCACCATCTCCCCACTGCATCAGGACCCCCAGCAGAACTTCCT
GGTCCAGGTGCTAGGAAGGAAGTACATCCGATTGTATTCGCCGCAAGAGTCTGAGGCAGTGTACCCTCAC
GAGACGCACATTCTTCATAACACCAGCCAGGTTGATGTGGAAAACCCCGACCTTGAGAAGTTTCCCAAGT
TCACTGAGGCCCCATTCCTGTCCTGCATTCTGTCCCCAGGAGACACCCTCTTTATACCTGCTAAGTACTG
GCATTATGTGCGCTCCCTGGACCTGAGCTTCTCTGTCAGCTTCTGGTGGTCATAG

Translation (414 aa):
MSEDTTEPLVGSSTLWKELRTLLPDKEEELKLDLGEKVDRSVAALLRQAVGLFYAGHWQGCLQASEAVLD
YSWEKLNTGPWRDVDKEWRRVYSFGCLLKALCLCQAPQKATTVVEALRVCDMGLLMGAAILEDILLKVVA
VLQTHQLPGKQPARGPHQDQPATKKAKCDASPAPDVMLERMVPRLRCPPLQYFKQHFLVPGRPVILEGVA
DHWPCMKKWSLQYIQEIAGCRTVPVEVGSRYTDEDWSQTLMTVDEFIQKFILSEAKDVGYLAQHQLFDQI
PELKRDISIPDYCCLGNGEEEEITINAWFGPQGTISPLHQDPQQNFLVQVLGRKYIRLYSPQESEAVYPH
ETHILHNTSQVDVENPDLEKFPKFTEAPFLSCILSPGDTLFIPAKYWHYVRSLDLSFSVSFWWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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