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Report for CCDS17601.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17601.1 Public Mus musculus 3 Tmod4 23 108 98 CCDS HistoryNCBI Gene:50874Re-query CCDS DB by CCDS ID:17601.1Re-query CCDS DB by GeneID:50874See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17601.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005769.12 ENSMUSP00000005769.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005769.12Link to Ensembl Protein Viewer:ENSMUSP00000005769.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000005769Re-query CCDS DB by Protein ID:ENSMUSP00000005769
Original member Current member EBI ENSMUST00000107227.3 ENSMUSP00000102846.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107227.3Link to Ensembl Protein Viewer:ENSMUSP00000102846.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107227Re-query CCDS DB by Protein ID:ENSMUSP00000102846
Original member NCBI NM_016712.4 NP_057921.1 Updated not alive Link to Nucleotide Sequence:NM_016712.4Link to Protein Sequence:NP_057921.1Re-query CCDS DB by Nucleotide ID:NM_016712Re-query CCDS DB by Protein ID:NP_057921
Current member NCBI NM_016712.5 NP_057921.1 Accepted alive Link to Nucleotide Sequence:NM_016712.5Link to Protein Sequence:NP_057921.1Re-query CCDS DB by Nucleotide ID:NM_016712Re-query CCDS DB by Protein ID:NP_057921Link to BLAST:NP_057921.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057921.1 345 Q9JLH8 345 100% 0 0

Chromosomal Locations for CCDS 17601.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95125555 95125677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95125820 95125976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95126411 95126527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95127340 95127429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95127589 95127719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95127804 95127911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95128269 95128412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95128600 95128744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95129088 95129110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGTCATCCTATCAGAAGGAACTGGAGAAATACAGAGACATCGACGAAGATGAGATCCTAAGGACCCTGA
GCCCTGAAGAGCTAGAACAGCTGGACTGTGAGCTACAAGAAATGGATCCTGAGAACATGCTCTTGCCAGC
TGGCCTGAGACAACGTGACCAGACAAAGAAGAGTCCAACAGGGCCACTGGACAGAGATGCCCTATTGCAG
TACCTGGAGCAACAGGCGCTAGAAGTCAAAGAGCGTGATGACTTGGTGCCCTACACTGGCGAGAAGAAGG
GAAAACCCTTTATTCAGCCTAAGAGAGAAATCCCAGCACAGGAACAGATTACGCTGGAGCCTGAGCTGGA
GGAAGCGCTGTCCCATGCTACAGATGCTGAAATGTGTGACATTGCAGCCATCCTGGGCATGTATACACTG
ATGAGCAACAAGCAATATTATGATGCCATCTGCAGTGGAGAGATCTGCAACACAGAAGGCATTAGCAGTG
TGGTACAGCCTGACAAGTATAAGCCAGTACCAGATGAACCTCCAAATCCCACAAACATTGAGGAGATGCT
AAAGAGGGTACGGAGTAATGACAAAGAGCTGGAGGAGGTGAACCTCAATAATATCCAGGACATCCCAATA
CCTGTGCTAAGTGACTTGTGTGAAGCAATGAAAACCAATACCTATGTCCGGAGCTTCAGTCTGGTGGCCA
CAAAGAGTGGTGACCCAATCGCCAATGCGGTGGCTGACATGTTGCGTGAGAACCGCAGTCTCCAGAGCCT
GAACATTGAGTCTAACTTCATCAGCAGCACAGGGCTCATGGCTGTGCTAAAGGCAGTTCGGGAAAATGCT
ACTCTCACTGAGCTCCGTGTAGATAACCAGCGCCAGTGGCCTGGTGATGCGGTAGAGATGGAGATGGCCA
CTGTGCTAGAGCAGTGTCCGTCTATTGTCCGCTTCGGGTACCACTTTACACAACAAGGACCACGAGCTCG
GGCAGCCCACGCCATGACCCGGAACAATGAGCTGCGTCGTCAGCAAAAGAAGAGATAA

Translation (345 aa):
MSSYQKELEKYRDIDEDEILRTLSPEELEQLDCELQEMDPENMLLPAGLRQRDQTKKSPTGPLDRDALLQ
YLEQQALEVKERDDLVPYTGEKKGKPFIQPKREIPAQEQITLEPELEEALSHATDAEMCDIAAILGMYTL
MSNKQYYDAICSGEICNTEGISSVVQPDKYKPVPDEPPNPTNIEEMLKRVRSNDKELEEVNLNNIQDIPI
PVLSDLCEAMKTNTYVRSFSLVATKSGDPIANAVADMLRENRSLQSLNIESNFISSTGLMAVLKAVRENA
TLTELRVDNQRQWPGDAVEMEMATVLEQCPSIVRFGYHFTQQGPRARAAHAMTRNNELRRQQKKR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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