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Report for CCDS24192.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24192.1 Public Mus musculus 10 Lyz3 23 108 98 CCDS HistoryNCBI Gene:77397Re-query CCDS DB by CCDS ID:24192.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24192.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020392.4 ENSMUSP00000020392.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020392.4Link to Ensembl Protein Viewer:ENSMUSP00000020392.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020392Re-query CCDS DB by Protein ID:ENSMUSP00000020392
Original member Current member EBI ENSMUST00000159193.7 ENSMUSP00000125436.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159193.7Link to Ensembl Protein Viewer:ENSMUSP00000125436.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159193Re-query CCDS DB by Protein ID:ENSMUSP00000125436
Original member Current member NCBI NM_029906.3 NP_084182.2 Accepted alive Link to Nucleotide Sequence:NM_029906.3Link to Protein Sequence:NP_084182.2Re-query CCDS DB by Nucleotide ID:NM_029906Re-query CCDS DB by Protein ID:NP_084182Link to BLAST:NP_084182.2

Chromosomal Locations for CCDS 24192.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 117234415 117234481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117235584 117235662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117237617 117237781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117238436 117238580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (456 nt):
ATGAAGGCTCCCCTAACTCTCCTTACTCTAGGGCTCCTCCTGCTCTCCATCACCATCCAGGGCAAGGTCT
ACGACCGATGTTCTTTGGCCAGAACTCTACAAAGTCTTGGTCTAGCTGGTTTCCAAGGAATCACGCTGGC
AAACTGGGTCTGTTTGGCCAAATGGGAGAGTAATTTTAACACAAACACTACAAGATTCAACCCTGAAGAC
CAAAGCACCAGCTATGGGATCTTTCAGATCAACAGCAGATTCTGGTGTAATGACGGCAAAACCCCAGGAT
CAAGGAACTTTTGTCGGATATCCTGCAAAGCTTTGCTGAAGAGCAACATCTGGTCTGCCGTAGTTTGTGC
AAAGAGGATCGTGAAGGATCCACAAGGAATTTATTCATGGGCGGGATGGATAAAACACTGTAAAAACAAA
AACCTCAAAGAGTACATTCGGGGCTGCCATCTGTAA

Translation (151 aa):
MKAPLTLLTLGLLLLSITIQGKVYDRCSLARTLQSLGLAGFQGITLANWVCLAKWESNFNTNTTRFNPED
QSTSYGIFQINSRFWCNDGKTPGSRNFCRISCKALLKSNIWSAVVCAKRIVKDPQGIYSWAGWIKHCKNK
NLKEYIRGCHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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