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Report for CCDS18603.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18603.1 Public Mus musculus 4 9530002B09Rik 23 108 98 CCDS HistoryNCBI Gene:77432Re-query CCDS DB by CCDS ID:18603.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18603.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024032.3 ENSMUSP00000024032.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024032.3Link to Ensembl Protein Viewer:ENSMUSP00000024032.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000024032Re-query CCDS DB by Protein ID:ENSMUSP00000024032
Original member Current member NCBI NM_023865.3 NP_076354.1 Accepted alive Link to Nucleotide Sequence:NM_023865.3Link to Protein Sequence:NP_076354.1Re-query CCDS DB by Nucleotide ID:NM_023865Re-query CCDS DB by Protein ID:NP_076354Link to BLAST:NP_076354.1

Chromosomal Locations for CCDS 18603.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 122689367 122689499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122700450 122700547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122701184 122701298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122702324 122702385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (408 nt):
ATGGTGTTACCTCGATCCCTGTGGCTGCTGTCTGTCTGTCTTCTGTCCTGGTGTTGTGATGCCAGGTCAC
TAGGTCCTCAAGATCTACAGCTAGAATCATGGCAAATAACTTTTGTGTTCTTGCATCTGAAAGGAGAAAC
AATAAGTATGGATGACATTGAAGTGATGTTTCAAATGAATAAAGCTGGAGCTTATGTCCCATCTGTTGAG
ACTGAGAAGGCTGTGATGGAGGATGTGGATAACAAAGCCTTGTATGTCAGCTCACATGCATTTAAGATTC
TCCCTAAGCAGCCTAAGTTGAGACATGGCCACACTGATTTTAAATTTCCTGAACCATCCCAAATGTGGAA
GGTATTGATGAACGATGACTCTACCCGCTACAAATTGAAATTTTGGCAAAGAACTTGA

Translation (135 aa):
MVLPRSLWLLSVCLLSWCCDARSLGPQDLQLESWQITFVFLHLKGETISMDDIEVMFQMNKAGAYVPSVE
TEKAVMEDVDNKALYVSSHAFKILPKQPKLRHGHTDFKFPEPSQMWKVLMNDDSTRYKLKFWQRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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