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Report for CCDS20076.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20076.1 Public Mus musculus 6 Tcaf1 23 108 98 CCDS HistoryNCBI Gene:77574Re-query CCDS DB by CCDS ID:20076.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20076.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045140.4 ENSMUSP00000036379.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045140.4Link to Ensembl Protein Viewer:ENSMUSP00000036379.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000045140Re-query CCDS DB by Protein ID:ENSMUSP00000036379
Original member Current member EBI ENSMUST00000045054.10 ENSMUSP00000046137.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045054.10Link to Ensembl Protein Viewer:ENSMUSP00000046137.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000045054Re-query CCDS DB by Protein ID:ENSMUSP00000046137
Original member Current member EBI ENSMUST00000121083.7 ENSMUSP00000114036.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121083.7Link to Ensembl Protein Viewer:ENSMUSP00000114036.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121083Re-query CCDS DB by Protein ID:ENSMUSP00000114036
Original member Current member NCBI NM_001355769.1 NP_001342698.1 Accepted alive Link to Nucleotide Sequence:NM_001355769.1Link to Protein Sequence:NP_001342698.1Re-query CCDS DB by Nucleotide ID:NM_001355769Re-query CCDS DB by Protein ID:NP_001342698Link to BLAST:NP_001342698.1
Original member Current member NCBI NM_001355770.1 NP_001342699.1 Accepted alive Link to Nucleotide Sequence:NM_001355770.1Link to Protein Sequence:NP_001342699.1Re-query CCDS DB by Nucleotide ID:NM_001355770Re-query CCDS DB by Protein ID:NP_001342699Link to BLAST:NP_001342699.1
Original member Current member NCBI NM_029930.3 NP_084206.1 Accepted alive Link to Nucleotide Sequence:NM_029930.3Link to Protein Sequence:NP_084206.1Re-query CCDS DB by Nucleotide ID:NM_029930Re-query CCDS DB by Protein ID:NP_084206Link to BLAST:NP_084206.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342698.1 922 Q8BNE1-2 922 100% 0 0
NP_001342699.1 922 Q8BNE1-2 922 100% 0 0
NP_084206.1 922 Q8BNE1-2 922 100% 0 0

Chromosomal Locations for CCDS 20076.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42673375 42673638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42675042 42675379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42676791 42677030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42677330 42677543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42678070 42678167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42678426 42679420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42686325 42686944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2769 nt):
ATGGCAACTCCCTCTGCTGCCTTTGAGGCCCTTATGAATGGAGTAACGAGTTGGGATATCCCCGAGGATT
CTGTTCCATGTGAACTGCTTCTTATTGGAGAGGCTTCATTTCCTATAATGGTGAATGACGTGGGCCAGGT
CCTCGTTGCCGCCTCTTCCTATGGCAGAGGCCGCATGGTGGTAGCATCTCATGAGGACTTCTTGCTGGAA
AGCCAGCTCTTTGTCTTTCTTGTCAATGCTGTTGGGTGGCTTCGTTCCTCCCCTAACTCAGCCATTGGTG
TGCACTCATCTTTAGCACCATTGGTGAAAATTCTCGAGAGCTGTGGAATAGAGTCAAAGATTGAGCCAGA
AGTCAATGACTCCCTGGGGGTTTACTGCATTGATGCCTACAATGAAACCATGACAGATAAGCTAGTCCAG
TTTGTGAAACGTGGAGGGGGCTTGCTCATAGGAGGCGAAGCATGGGATTGGGATACCCAGGGTGATGATG
ATAGAGTTCTGTTCGCATTTCCTGGGAATCTGGTGACCAGTGTGGCTGGTGTGTACTTCACTGACAACAA
AGCAGACACAAGTTTCTTTAAAGTCTCCAAGAAGATGCCTAAGATACCCATCTTAGTTCGTTGTGATGAC
GACCTCTCAGATGACAGAGATGAGCTTCTGCGTGGCATAATAGACCTGGACATCACCAACTCGGACTGCT
TCCCATCCCAGCTACTAGTTCATGGGTCTTTGGCTTTTCCTTTGGGGCTAGATACCTACCATGGCTGTGT
GATAGCTGCAGCTCGCTATGGCCGGGGTCGGGTAGTTGTAACTGGTCATAAGGTTTTATTTACTGTGGGT
AAACTCGGCCCCTTTTTGCTCAATGCTGTCCGCTGGCTGGATGGTGGCCGCAAAGGCAAGATTGTGGTAC
AGACAGAGCTGAGAACACTAAGTGGTCTGCTCGCAGTAGGGGGTATAGACACCAGCATTGAGCCCCACCT
GACCAGTGACGCAAGTGTCTATTGTTTTGAACCCACAAGCGATGTGGGGGTTAAGGAACTACAGGAGTTT
GTAGCAGAGGGTGGTGGGCTGTTTGTTGGAACTCAAGCCTGGTGGTGGGCTTTTAAGAACCCAGGAGTGT
CCCCTCTGGCTCGATTCCCAGGAAACCTGCTCCTCAATGCCTTTGGTATCAGCATCACAAGCCAGAGTCT
CAATCCAGGACCTTTCCGTACCCCTAAAATAGGAACAAGGACCTATCACTTCCGCTCTACCCTAGCAGAG
TTCCAGGTGATAATGGGCAGGAAGAGAGGGAATGTGGAGAAGGGCTGGCTAGCCAAGCTAGGCCCAGATG
GGGCAACTTTCCTGCAGATTCCTGCAGAAGAGATCCCTGCTTACATGTCTGTGCACAGACTCCTGAGGAA
GCTGCTGAGCCGCTATCGGCTTCCAGTGGCAACCAGAGAGAACCCGGTCATCAATGACTGTTGTAGGGGA
GCCATGCTTTCCCTGGCCACAGGTCTGGCCCACTCTGGAAGTGACCTCTCACTGCTGATCCCAGAAATTG
AAGACGTGTACAGCAGCCGCTACCTGCGCCCCTCAGCGTCTCCCATCACCGTGAATGTCAATTGCACTAA
TCCAGGCACTCGATATTGCTGGATGAGCACCGGACTCTACATACCTGGAAGGCAAGTCATAGATGTCTCC
GTGCCTGAGAGTGCTGCCTCTGCTGACCTGAAGATACAAATTGGCTGTCATACTGATGATCTGACAAGGG
CCAGCAAGCTGTTCCGAGGCCCCCTTGTGATTAACCGGTGTTGCTTGGACAAACCCACGAAATCAATCAC
CTGCCTCTGGGGTGGTCTCCTCTATATCATTGTGCCTCAGAATAGCAAACTGGGTTCTGTGCCCCTTACA
GTGAAGGGGGCTGTTCGTGCTCCATTCTACAAGCTAGGGGAGACATCCAAGGAAGAATGGAAGAGGCGTC
TCCTGGAATATCCAGGTCCATGGGGAGAACTGGCCACTGACAACATCATCCTGACTGTGCCCACTGCAAA
TCTTCGAACGCTGGAGAATCCTGAGCCACTGCTCCGCCTCTGGGATGAGATGATGCAGGCTGTGGCTAAG
CTGGGAGGCGAGACCTTCCCTTTGCGTCTGCCACAGAGGATAGTGGCTGATGTTCAGATCTCAGTAGGCT
GGATGCACGCAGGGTACCCCATCATGTGCCATCTGGAGTCAGTGCAGGAACTCATCAACGAGAAGCTCAT
CCGGACCAAGGGGCTCTGGGGCCCTGTGCATGAGCTGGGCCGCAATCAGCAGAGGCAGGAGTGGGAGTTC
CCCCCACATACTACGGAAGCCACGTGCAACCTGTGGTGTGTTTACGTGCATGAAACGGTCCTGGGCATAC
CCCGAAGCCGTGCCAATATTGCGCTATGGCCTCCAGTTCGGGAGAAGAGAGTCCGAATCTACTTGAGCAA
GGGACCCAGTGTGAAACACTGGAACGCCTGGACTGCGTTGGAAACGTACCTACAGCTCCAAGAGGCCTTT
GGTTGGGAGCCATTTATTCGTCTCTTCACCGAGTACAGAAACCAGACAACATCGAGCTCGCCGCCCTCAG
ACAACGTCGACAAAATGAATCTATGGGTCAAGATGTTCTCCCAGCAAGTGCAGAGGAATCTGGCTCCATT
CTTTGAGGCCTGGGGCTGGCCTATCCAGAAGGAAGTGGCTACAAGCTTAGCCTATCTGCCCGAATGGAAA
GAGAATATAATGAAATTGTACCTCCTCACACAGATGTAA

Translation (922 aa):
MATPSAAFEALMNGVTSWDIPEDSVPCELLLIGEASFPIMVNDVGQVLVAASSYGRGRMVVASHEDFLLE
SQLFVFLVNAVGWLRSSPNSAIGVHSSLAPLVKILESCGIESKIEPEVNDSLGVYCIDAYNETMTDKLVQ
FVKRGGGLLIGGEAWDWDTQGDDDRVLFAFPGNLVTSVAGVYFTDNKADTSFFKVSKKMPKIPILVRCDD
DLSDDRDELLRGIIDLDITNSDCFPSQLLVHGSLAFPLGLDTYHGCVIAAARYGRGRVVVTGHKVLFTVG
KLGPFLLNAVRWLDGGRKGKIVVQTELRTLSGLLAVGGIDTSIEPHLTSDASVYCFEPTSDVGVKELQEF
VAEGGGLFVGTQAWWWAFKNPGVSPLARFPGNLLLNAFGISITSQSLNPGPFRTPKIGTRTYHFRSTLAE
FQVIMGRKRGNVEKGWLAKLGPDGATFLQIPAEEIPAYMSVHRLLRKLLSRYRLPVATRENPVINDCCRG
AMLSLATGLAHSGSDLSLLIPEIEDVYSSRYLRPSASPITVNVNCTNPGTRYCWMSTGLYIPGRQVIDVS
VPESAASADLKIQIGCHTDDLTRASKLFRGPLVINRCCLDKPTKSITCLWGGLLYIIVPQNSKLGSVPLT
VKGAVRAPFYKLGETSKEEWKRRLLEYPGPWGELATDNIILTVPTANLRTLENPEPLLRLWDEMMQAVAK
LGGETFPLRLPQRIVADVQISVGWMHAGYPIMCHLESVQELINEKLIRTKGLWGPVHELGRNQQRQEWEF
PPHTTEATCNLWCVYVHETVLGIPRSRANIALWPPVREKRVRIYLSKGPSVKHWNAWTALETYLQLQEAF
GWEPFIRLFTEYRNQTTSSSPPSDNVDKMNLWVKMFSQQVQRNLAPFFEAWGWPIQKEVATSLAYLPEWK
ENIMKLYLLTQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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