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Report for CCDS1743.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1743.1 Public Homo sapiens 2 SLC30A3 24 110 108 CCDS HistoryNCBI Gene:7781Re-query CCDS DB by CCDS ID:1743.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1743.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000233535.9 ENSP00000233535.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000233535.9Link to Ensembl Protein Viewer:ENSP00000233535.4Re-query CCDS DB by Nucleotide ID:ENST00000233535Re-query CCDS DB by Protein ID:ENSP00000233535
Original member Current member NCBI NM_003459.5 NP_003450.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003459.5Link to Protein Sequence:NP_003450.2Re-query CCDS DB by Nucleotide ID:NM_003459Re-query CCDS DB by Protein ID:NP_003450Link to BLAST:NP_003450.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003450.2 388 Q99726 388 100% 0 0

Chromosomal Locations for CCDS 1743.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27255312 27255460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27256386 27256520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27256788 27256893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27257154 27257352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27257905 27258058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27258161 27258307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27258753 27258934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27262812 27262906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGAGCCCTCTCCAGCCGCTGGGGGCTTGGAGACCACTCGCCTGGTGAGCCCCCGGGACCGCGGTGGCG
CCGGAGGCAGCCTGCGTTTGAAGAGTCTCTTCACAGAGCCCTCAGAGCCCCTCCCTGAGGAGTCCAAACC
TGTGGAGATGCCCTTCCACCACTGCCACAGGGACCCCCTTCCGCCGCCGGGCCTTACCCCTGAGAGGCTG
CATGCACGGAGGCAGCTATATGCTGCCTGTGCCGTTTGCTTTGTCTTCATGGCTGGGGAGGTGGTCGGCG
GGTATCTGGCACACAGCCTGGCCATCATGACCGATGCAGCCCACTTGCTGGCGGATGTGGGCAGCATGAT
GGGCAGCCTCTTCTCCCTCTGGCTCTCCACCCGTCCAGCCACCCGCACCATGACCTTTGGCTGGCACCGT
TCAGAGACTCTGGGGGCTTTGGCCTCTGTGGTCTCCCTCTGGATGGTCACTGGCATCCTCCTGTACCTGG
CCTTCGTCCGCCTGCTGCACAGCGACTACCACATCGAGGGGGGTGCCATGCTGCTGACCGCCAGCATCGC
AGTCTGTGCCAACCTGTTAATGGCCTTTGTGCTGCACCAGGCTGGGCCCCCCCACAGCCACGGGTCTAGG
GGAGCAGAGTATGCACCGCTGGAGGAGGGGCCTGAAGAGCCCCTGCCCCTGGGGAACACCAGCGTCCGGG
CGGCATTTGTGCACGTGCTGGGGGACCTCCTGCAGAGCTTTGGGGTACTGGCTGCCTCCATCCTCATCTA
CTTCAAGCCTCAATACAAGGCAGCCGACCCCATCAGCACCTTCCTCTTCTCCATCTGTGCCCTTGGATCC
ACCGCTCCCACCCTCCGAGACGTTCTTCGAATCCTCATGGAAGGTACCCCCCGCAATGTGGGGTTCGAAC
CTGTGCGGGATACGCTGTTGTCGGTGCCAGGAGTCCGGGCAACCCATGAGCTGCACCTGTGGGCCCTTAC
GCTCACTTACCATGTTGCCTCTGCACACCTGGCCATCGACTCCACCGCTGACCCTGAAGCCGTCCTGGCT
GAAGCCTCATCCCGGCTCTACTCCCGGTTTGGATTCTCCAGCTGCACCCTGCAGGTCGAGCAGTATCAGC
CGGAGATGGCCCAGTGCCTGCGCTGCCAGGAACCCCCCCAAGCCTGA

Translation (388 aa):
MEPSPAAGGLETTRLVSPRDRGGAGGSLRLKSLFTEPSEPLPEESKPVEMPFHHCHRDPLPPPGLTPERL
HARRQLYAACAVCFVFMAGEVVGGYLAHSLAIMTDAAHLLADVGSMMGSLFSLWLSTRPATRTMTFGWHR
SETLGALASVVSLWMVTGILLYLAFVRLLHSDYHIEGGAMLLTASIAVCANLLMAFVLHQAGPPHSHGSR
GAEYAPLEEGPEEPLPLGNTSVRAAFVHVLGDLLQSFGVLAASILIYFKPQYKAADPISTFLFSICALGS
TAPTLRDVLRILMEGTPRNVGFEPVRDTLLSVPGVRATHELHLWALTLTYHVASAHLAIDSTADPEAVLA
EASSRLYSRFGFSSCTLQVEQYQPEMAQCLRCQEPPQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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