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Report for CCDS48419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48419.1 Public Mus musculus 1 Mroh9 23 108 98 CCDS HistoryNCBI Gene:78258Re-query CCDS DB by CCDS ID:48419.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48419.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096608.4 ENSMUSP00000094365.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096608.4Link to Ensembl Protein Viewer:ENSMUSP00000094365.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096608Re-query CCDS DB by Protein ID:ENSMUSP00000094365
Original member Current member NCBI NM_030071.1 NP_084347.1 Accepted alive Link to Nucleotide Sequence:NM_030071.1Link to Protein Sequence:NP_084347.1Re-query CCDS DB by Nucleotide ID:NM_030071Re-query CCDS DB by Protein ID:NP_084347Link to BLAST:NP_084347.1

Chromosomal Locations for CCDS 48419.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 163024443 163024753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163026465 163026527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163037983 163038085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163038874 163038990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163039084 163039236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163043984 163044160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163045650 163045787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163045971 163046091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163047836 163047973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163055554 163055699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163056759 163056924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163058019 163058173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163060617 163060766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163062429 163062550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163065989 163066124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163071918 163072022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163074668 163074754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163075545 163075680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163076290 163076369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163079480 163079526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163080555 163080579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2676 nt):
ATGATCCAAGAAACTACAAACACAATGACCCGCCTCCAGACTCTGCAGTCCTCTGTGACTTGGTACCATG
TGGAGTTTAAAGCCGAAATCCTATTGGATACATACTCAGGTCTGTTAAGTGAACAATCCATAATCTTGGC
CATGAACTCCAGTTTTGTAGATCCTCTGGTGCAGTTTGAATCACAATTGCAGATAATAGAGCTATCTTTC
AGAAAGGTATTTTCCATGCCAAGTCTTAGCACAGTGAAAGCAATGGGACGGACCTCTGAGGACACTGAGG
ACCTGGAGAATTTATACCAAAATATTTTCAACATATTTGAAGACACTCTTCTTATTTTAGTGTCTAAAGA
CTTCTACAAGATACAAATCTTAAAGGAAATGGCCACTTGGATGAGTGAGGACAGTCAGTACCAGCAAGAG
CGAGCAATGATGGTTATCACCAGGGTATTAATCTTTGCATCCAAGAGGGTCAAGAAATATCGGAGTATCG
ATGCTCCGTGTTTAGGTCTCCTGGCTGCAGAGCTCTCCCTCTTCTGTTCCCATAATGACCCAGAAATCAT
ACAACAAGCAATGGCAGGGATGAATTACGTCCTCTACATCGCCTTGTGTCAGAATTCCAATGTTGTAAAA
TTCAGATCTTCTAAGCCGAGTGAGGAAGGAAGCAACATCAAGGTTATGACGTCTGGTGTTGAGTCACTAG
CCAAGATGACTCAAGGAGAGAAAACCAAAATTGCCCAGAGTGTGGGGCAAATATTACTGCCCCAATTGCT
GACTGACTTTGTGTGGACTCTCCTGAAAAAACTCTCTTCTCCTAACAACAAAATGGCAATTGAGGCGGCA
TCCTTACTGAAGCTGACTTTGGAGTTTCATGCCCAGAAGATCACCAGGGTGTCTAAAATTGTGGAAGACA
TTTATGAGCAGCTCTGTGGGAATCCTTCCCCCATGATGAAGAGTGTCATGCTGCACGTTATCAGCGTGTT
AACACGTGCTTCCCCGAAGAAGGTCATCTTTCAGCTCATGGAGTTCCCAGTCCCTGCAGACAAAACTCTG
CTACTGCTGTGGCAAGCAGCAAGTATGGAGTCAAGTGTTGCATCTGAAGTGCTGAAGACAATCTTGTTGA
TACTAAAAGGAAAGCCTGGAGAAATAGAGGAAACACTGGGAGAAAAAAGACGTTTCTCCCTCGATGCCAC
CAACATGATGCCTGTGGCGGCATCTCAGGCCCTGTGCACATTTCTACCTGTGACTTCTTATGAGAAAGTG
GTGGTCAAGTTATTCCCTGAGTTCCTGATGGCCCTCTTGCTTCAACTCTCCTACTGTAGTCATCATTTAA
AAAATACGGCACGGAACAGACCTCTCTACGTAAGAGATGCCCTAAAGGCTCTGCTAAATTGTTCGGGACT
AGAGGAAGTGGACAAAGCTCTGGAGAAAAAGAATTTTTGGGACCAGTTTTCTCAAGTCATGGATCACCAG
TATGGGATCCACCTCATTGCGAAAACTCTCAGTGAATGTAACTTTCCACAGTTTCCAGAGACCCTACATT
ATGTCTACAAGATCGCAGTAGAAGGTCCTAGAAGGTCAGAAGACAGTATCGTCACCATAATATTCTTTGC
TGAACTTCTGAACAACTTCTTCAAGGAATCATTACCGGAAGAATTTTTGGTCCTCTTCAGAAACTGGATT
AATGATTCCAATCCTTCAGTTGGCAAAATGAGTCTTCAGAAGATTGCCAGCATGGCACCAGTTTTCAGTG
AAATAGAGAGTGTGTGCAACCTCTTACTCCCAGTCCTAGACGCTTTTCTTTCAAAAGAGCACACTGTCAT
CATCCGGGCCATGCTTACCCTTCGAAATATTTTGAGTAAACTGGACAAGAAAATCTACTCCACAGTGTGT
ATCAGAATTGCTTCCAGCTACTCTCCTCTAATGGATCATGTTAATAGTGGCATTCAGTGCATGGCCATTA
GGCATTTTGGTGAGTTACTAATGGATATGAATCACTACAATTGGATGCTGAAGCACATAGTCCTAGGAAG
CCTCGTGCCCCTGATCCTGTTTTTGGAGTCTAAAGAAACAAGAATTGTGAAAGCTTGTAGATATACATTG
ACTATCTGTGTTACACAACTGAAGTGGTCAACAGCATCTCTGCTCAAAGAGGAAACTTACAATTTTGAGT
CAGTAGTTCTCGACATCTGCAACAACCTTCTTTCTTCTTATGAAAGTTACATTACAGACTTAATATCTGA
TACCTTAGGGTTCCTGGGGAGCTCTCGGGACTTTCTGAAGAAAGGAGCCATTATATTAGTAGGGTACTTG
GGGAAATCAGGAGAACATTTACTACTCAGAGATGAAATTGACATCATGATTGAGGTTATTGAACGATTGA
CCCGGGTGGAAGATGCTCTGATCAAGGAGTTGGCAGAGAAAACCCGCAAACTTTTTAAAGAAATAGCCAA
TCGAATGTCCTCTTCAACCATCAAACAAACCTTCCGGAAATGGGTTAAGATGTTCCGAACCAAAAAACTG
AAGCTCATTTATGATGTGGCCAGTATTAGAACCCTCGAAGGGAACGAAATAGAAATCATTAAAGATAGTC
TGATAGAGTCCAATTTAGAGAAGTCTGAAAAGCCATACAGAGTCACTAAGGAAAATTATTTCAATGAATC
CCTATATACAGTTTGA

Translation (891 aa):
MIQETTNTMTRLQTLQSSVTWYHVEFKAEILLDTYSGLLSEQSIILAMNSSFVDPLVQFESQLQIIELSF
RKVFSMPSLSTVKAMGRTSEDTEDLENLYQNIFNIFEDTLLILVSKDFYKIQILKEMATWMSEDSQYQQE
RAMMVITRVLIFASKRVKKYRSIDAPCLGLLAAELSLFCSHNDPEIIQQAMAGMNYVLYIALCQNSNVVK
FRSSKPSEEGSNIKVMTSGVESLAKMTQGEKTKIAQSVGQILLPQLLTDFVWTLLKKLSSPNNKMAIEAA
SLLKLTLEFHAQKITRVSKIVEDIYEQLCGNPSPMMKSVMLHVISVLTRASPKKVIFQLMEFPVPADKTL
LLLWQAASMESSVASEVLKTILLILKGKPGEIEETLGEKRRFSLDATNMMPVAASQALCTFLPVTSYEKV
VVKLFPEFLMALLLQLSYCSHHLKNTARNRPLYVRDALKALLNCSGLEEVDKALEKKNFWDQFSQVMDHQ
YGIHLIAKTLSECNFPQFPETLHYVYKIAVEGPRRSEDSIVTIIFFAELLNNFFKESLPEEFLVLFRNWI
NDSNPSVGKMSLQKIASMAPVFSEIESVCNLLLPVLDAFLSKEHTVIIRAMLTLRNILSKLDKKIYSTVC
IRIASSYSPLMDHVNSGIQCMAIRHFGELLMDMNHYNWMLKHIVLGSLVPLILFLESKETRIVKACRYTL
TICVTQLKWSTASLLKEETYNFESVVLDICNNLLSSYESYITDLISDTLGFLGSSRDFLKKGAIILVGYL
GKSGEHLLLRDEIDIMIEVIERLTRVEDALIKELAEKTRKLFKEIANRMSSSTIKQTFRKWVKMFRTKKL
KLIYDVASIRTLEGNEIEIIKDSLIESNLEKSEKPYRVTKENYFNESLYTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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