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Report for CCDS26552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26552.1 Public Mus musculus 13 B230219D22Rik 23 108 98 CCDS HistoryNCBI Gene:78521Re-query CCDS DB by CCDS ID:26552.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26552.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057844.9 ENSMUSP00000055271.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057844.9Link to Ensembl Protein Viewer:ENSMUSP00000055271.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000057844Re-query CCDS DB by Protein ID:ENSMUSP00000055271
Original member Current member NCBI NM_181278.2 NP_851795.1 Accepted alive Link to Nucleotide Sequence:NM_181278.2Link to Protein Sequence:NP_851795.1Re-query CCDS DB by Nucleotide ID:NM_181278Re-query CCDS DB by Protein ID:NP_851795Link to BLAST:NP_851795.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851795.1 188 Q80X32 188 100% 0 0

Chromosomal Locations for CCDS 26552.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55699076 55699642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGATGCACCCCGTTGCCGGCAGTAATCCAGCGTTCTGTGGGCCTGGCAAGCCTTCCTGCCTCAATGAAG
ATGCCATGAGAGCTGCTGATCAGTTCGATCTGTATTCCTCCCAGCAAAACAAGTACAGCCACACAGTCAG
CCACAAACCAATGGTTTGTCAGAGGCAAGACCCATTAAATGAAACACACTTGCAGCCTACCAGTGGCAGA
AACATAGAGATAAAAGATGAACTAAAGAAAAAGAAAAACCTCAATCGATCTGGTAAGCGAGGCCGGCCTT
CGGGAACTACCAAGTCAGCAGGATACCGGACCAGCACAGGCAGACCCCTGGGAACTACCAAAGCAGCTGG
ATTTAAAACAAGTCCAGGCAGACCTTTGGGTACAACCAAAGCTGCAGGATACAAAGTCAGCCCAGGGAGA
CCTCCAGGTAGCATTAAAGCTCTGTCCCGCCTTGCAGATCTTGGCTATGGCTGTGGCACTGCTGCCTTTC
CTTACCCTATGATGCATAGTAGAGTGGTGCACGGGCTTCAGGAAACGAGTGGTGAAGTCAAGCCGCCCAG
CGAGTGA

Translation (188 aa):
MMHPVAGSNPAFCGPGKPSCLNEDAMRAADQFDLYSSQQNKYSHTVSHKPMVCQRQDPLNETHLQPTSGR
NIEIKDELKKKKNLNRSGKRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGR
PPGSIKALSRLADLGYGCGTAAFPYPMMHSRVVHGLQETSGEVKPPSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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