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Report for CCDS57008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57008.1 Public Mus musculus 15 Troap 23 108 98 CCDS HistoryNCBI Gene:78733Re-query CCDS DB by CCDS ID:57008.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57008.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039665.7 ENSMUSP00000035389.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039665.7Link to Ensembl Protein Viewer:ENSMUSP00000035389.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000039665Re-query CCDS DB by Protein ID:ENSMUSP00000035389
Original member Current member EBI ENSMUST00000230054.1 ENSMUSP00000155404.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230054.1Link to Ensembl Protein Viewer:ENSMUSP00000155404.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230054Re-query CCDS DB by Protein ID:ENSMUSP00000155404
Original member Current member NCBI NM_001162506.1 NP_001155978.1 Accepted alive Link to Nucleotide Sequence:NM_001162506.1Link to Protein Sequence:NP_001155978.1Re-query CCDS DB by Nucleotide ID:NM_001162506Re-query CCDS DB by Protein ID:NP_001155978Link to BLAST:NP_001155978.1
Original member Current member NCBI NM_030159.1 NP_084435.1 Accepted alive Link to Nucleotide Sequence:NM_030159.1Link to Protein Sequence:NP_084435.1Re-query CCDS DB by Nucleotide ID:NM_030159Re-query CCDS DB by Protein ID:NP_084435Link to BLAST:NP_084435.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155978.1 668 B7ZNG4 668 100% 0 0
NP_084435.1 668 B7ZNG4 668 100% 0 0

Chromosomal Locations for CCDS 57008.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 99075355 99075498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99075608 99075797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99077288 99077445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99077529 99077666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99077832 99077911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99078247 99078323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99078784 99078902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99080866 99080949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99081191 99081250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99081835 99081969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99082126 99082705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99082909 99083102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99083228 99083275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2007 nt):
ATGACTACCCTCCAAACCAATAAGGATCCCCATCTCCGAGGTGTATCTCCCAACCCTAGCAAGATTCCAG
TACTCTCCCAAAGATGCCAAGATTTTTCCTCAGTCAAGTCGCGCTCTCTGGACCAGGAGAACCAAGATCC
GAGGACACCAGCACAGAAACCACCGCGCAGTACTCAACGTCAACGTCCACTCACTGACACGGCAGGCCTC
AGATCGAAAACCTTGCACCAGACTGAAAAATCACCAAGCTTGAAGACCCTGCGGAACCCTCTGGAGGAAC
TCAAGCCTAGCTCTGGGGGATCAAATGTGGGGCTTGTGACCCATCCCCAGACAGAGGCCATAGGGGCTAT
AGAGTTTGTGGCTGACCCTGCAGCCCTGGCCACCATCTTGTCAGGTGAGGGAGTGAAGAGCTGTCCCCAG
GGGTACCGGTCCAGTCTGGCTCAGAGAGTGCTAGTCCGTGAGAGAAAGGGAGGCACCACCCAGAGGGGCC
AGAGTGCAAGGTCTTCTGCATACCTGGCTCCCAGAATCCCCACCCATCAAGTGGGTCCTGCCAGGGCTTC
CTGCTTCTCAAGACTGGAGGGCCCGGGACTCCGGGACCACACTTTGTCCCCACCCCGGTTAGAGGCTCTG
AATCCACCTCCAGGCTCCTCTCACTCCTCCACTCGACCCAGCTTACAGGAGCTAAGAAGAGAGACATGTG
GCGGCGGCAGGGACGGGGACTGTACTGACAGAAGGACCTCAGCAAGCCAAGCCTCAAGACTGCTCCTGAA
GACCCCGGTTCAGCCTGCTTCCTTACCCCTCCGAGGCGAGCAGGAGGCTGTCCCTCACTCCGACGACGGA
GGGGGAAGACATCATCTGGGTCTGGCTCAACGGATACCATTAAAAGAAAGTCTGACAAACACCAGGAGCA
CATATTCATCCATGAAACGCTTTGCCATTCGACGGAAAGCCCAATTCACACCCCTCCGATCGCTACCTAA
AGTTCAGCAGGCTCAGTGGCTGAGTGGCCTCTCCCCTCATTCCTCCCCTGAAGAGCCTGCCCTGCCCTGG
AGGCAGATTGCTATGAAGTTGTTTGACCAGGAGAGTCGCATCACCTTGCAGAAGGAACCCAGGAAACCAT
CGGTGGCAAGCACTTCCGGGCCTCGCCCCAAGAGAACCCCCAGCCACCAGGAGCTAAGGATACAGCGCAT
CAATATTTTGCAACAGCTCTTGCAGCAGGAGGTAGAGGGGCTGGCCATGGGCGATGGTGCCCCTCTGAAT
GGAGGCTCTGCTTTCGATATGACTGAACTAAAGCTCCCGACGGCTGAAATTTCTAGAACTCTGACAGCTT
CAGAACACAATTCTGGAGCTGCCCTTGTTGGACTGTCACAACACTCTGGTGCGACAGAGCCCCTCCTTTC
GGAAGAGTGTGAGGAGCCACAGGCCTACCCTGAGGAGACTAAGGCGGCTCAGCCCTGTTCTACCACAGAA
CTAAAGCCCCCAGTGCCACACAGAGCTGAGCCAGAGCTGCCGGAGCCGTGCCTTCCAGCACTGTCCGGAC
CCCCTCTGCCTAGCTGTCGGGGACAGGCTGAGCCCCCCATGGCCTGCCCTAGGACAGAGCCGGGAGCATC
GGCAGCCTGCGCTCTGGAAGCTGGAACCCCAGAGTCCAGCACGCAGCCCTGTTGCAATCAGGGGCCTCCA
GCAACAGCCAGCTTGACCTTCTCGTCCCAAAGCCCAGTCTGTGCCAGCCCCTCTATTCACTCACTCTACC
CAACAGGCTATTCAGGCCCCAGCAGCTTGGCCCCTCGGACCCTGGCTCTGAGGCAGCGCCTCAGGGCGTG
TCTCGACACCATCCATAGCTTCCAGGAGGCTCACCTGGATGATGAATGCGCCTTCTACACCAGCCGAGCC
CCACCTCCCGGGCCCACCCGGGTCTTCACCAACCCCGTGGTCACAACGCTTGAATGGCAAGATGCCCTGC
GTTTCGTTCCAATTGGCCCTGTGGTCCCACAGGACTCTCCATCATGA

Translation (668 aa):
MTTLQTNKDPHLRGVSPNPSKIPVLSQRCQDFSSVKSRSLDQENQDPRTPAQKPPRSTQRQRPLTDTAGL
RSKTLHQTEKSPSLKTLRNPLEELKPSSGGSNVGLVTHPQTEAIGAIEFVADPAALATILSGEGVKSCPQ
GYRSSLAQRVLVRERKGGTTQRGQSARSSAYLAPRIPTHQVGPARASCFSRLEGPGLRDHTLSPPRLEAL
NPPPGSSHSSTRPSLQELRRETCGGGRDGDCTDRRTSASQASRLLLKTPVQPASLPLRGEQEAVPHSDDG
GGRHHLGLAQRIPLKESLTNTRSTYSSMKRFAIRRKAQFTPLRSLPKVQQAQWLSGLSPHSSPEEPALPW
RQIAMKLFDQESRITLQKEPRKPSVASTSGPRPKRTPSHQELRIQRINILQQLLQQEVEGLAMGDGAPLN
GGSAFDMTELKLPTAEISRTLTASEHNSGAALVGLSQHSGATEPLLSEECEEPQAYPEETKAAQPCSTTE
LKPPVPHRAEPELPEPCLPALSGPPLPSCRGQAEPPMACPRTEPGASAACALEAGTPESSTQPCCNQGPP
ATASLTFSSQSPVCASPSIHSLYPTGYSGPSSLAPRTLALRQRLRACLDTIHSFQEAHLDDECAFYTSRA
PPPGPTRVFTNPVVTTLEWQDALRFVPIGPVVPQDSPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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