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Report for CCDS12417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12417.1 Public Homo sapiens 19 PLEKHF1 24 110 108 CCDS HistoryNCBI Gene:79156Re-query CCDS DB by CCDS ID:12417.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12417.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000436066.4 ENSP00000389787.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000436066.4Link to Ensembl Protein Viewer:ENSP00000389787.2Re-query CCDS DB by Nucleotide ID:ENST00000436066Re-query CCDS DB by Protein ID:ENSP00000389787
Original member Current member EBI ENST00000592810.1 ENSP00000466292.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000592810.1Link to Ensembl Protein Viewer:ENSP00000466292.1Re-query CCDS DB by Nucleotide ID:ENST00000592810Re-query CCDS DB by Protein ID:ENSP00000466292
Original member Current member NCBI NM_024310.5 NP_077286.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024310.5Link to Protein Sequence:NP_077286.3Re-query CCDS DB by Nucleotide ID:NM_024310Re-query CCDS DB by Protein ID:NP_077286Link to BLAST:NP_077286.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077286.3 279 Q96S99 279 100% 0 0

Chromosomal Locations for CCDS 12417.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 29673840 29674679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (840 nt):
ATGGTGGACCACTTGGCCAACACGGAGATCAACAGCCAGCGCATCGCGGCAGTGGAGAGCTGCTTCGGGG
CCTCGGGGCAGCCGCTGGCGCTGCCAGGCCGAGTGCTGCTGGGCGAGGGCGTGCTGACCAAAGAGTGCCG
CAAGAAGGCCAAGCCGCGCATCTTCTTCCTCTTTAACGACATCCTGGTGTATGGCAGCATCGTGCTCAAC
AAGCGCAAGTACCGCAGCCAGCACATCATCCCCCTGGAGGAGGTCACACTGGAGCTGTTGCCGGAGACGC
TGCAGGCCAAGAACCGCTGGATGATCAAGACGGCCAAGAAGTCCTTTGTGGTGTCGGCCGCCTCCGCTAC
GGAGCGCCAGGAATGGATTAGCCACATCGAGGAGTGCGTGCGGCGGCAACTGAGGGCCACGGGCCGCCCG
CCCAGCACGGAGCACGCGGCACCCTGGATCCCCGACAAGGCCACGGACATCTGCATGCGCTGCACGCAGA
CGCGCTTCTCTGCCCTCACGAGGCGCCACCACTGCCGCAAGTGCGGCTTCGTGGTCTGCGCTGAGTGCTC
GCGCCAGCGCTTCCTGCTCCCGCGCCTGTCCCCCAAGCCCGTGCGCGTCTGCAGCCTCTGCTACCGCGAA
CTGGCCGCCCAGCAGCGGCAGGAGGAGGCGGAGGAGCAGGGCGCGGGGTCCCCAGGGCAGCCAGCCCACC
TGGCCCGGCCCATCTGCGGAGCGTCCAGTGGAGATGACGATGACTCCGACGAGGACAAGGAGGGCAGCAG
GGACGGCGACTGGCCCAGCAGCGTGGAGTTCTACGCCTCGGGGGTGGCCTGGTCTGCCTTCCACAGCTGA

Translation (279 aa):
MVDHLANTEINSQRIAAVESCFGASGQPLALPGRVLLGEGVLTKECRKKAKPRIFFLFNDILVYGSIVLN
KRKYRSQHIIPLEEVTLELLPETLQAKNRWMIKTAKKSFVVSAASATERQEWISHIEECVRRQLRATGRP
PSTEHAAPWIPDKATDICMRCTQTRFSALTRRHHCRKCGFVVCAECSRQRFLLPRLSPKPVRVCSLCYRE
LAAQQRQEEAEEQGAGSPGQPAHLARPICGASSGDDDDSDEDKEGSRDGDWPSSVEFYASGVAWSAFHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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