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Report for CCDS26660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26660.1 Public Mus musculus 13 Lysmd3 23 108 98 CCDS HistoryNCBI Gene:80289Re-query CCDS DB by CCDS ID:26660.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26660.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000224300.1 ENSMUSP00000152940.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224300.1Link to Ensembl Protein Viewer:ENSMUSP00000152940.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224300Re-query CCDS DB by Protein ID:ENSMUSP00000152940
Original member Current member NCBI NM_030257.1 NP_084533.1 Accepted alive Link to Nucleotide Sequence:NM_030257.1Link to Protein Sequence:NP_084533.1Re-query CCDS DB by Nucleotide ID:NM_030257Re-query CCDS DB by Protein ID:NP_084533Link to BLAST:NP_084533.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084533.1 305 Q99LE3 305 100% 0 0

Chromosomal Locations for CCDS 26660.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 81665015 81665269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 81669161 81669823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGCGGGGAGGAATCAGAACCGGACGGTTTCCCTCCCAGGAATTCAGGCCAGTGGCCATGTACTTGCTT
TTGGAAATTGTACAGACAATGACATGTTGGAAGAAGATGCTGAAGTCTACGAACTTCGGTCCAGGGGAAA
GGAGAAGGTTCGAAGAAGCGCATCGAGAGATAGACTTGATGACATTGTTATATTAACCAAAGATATCCAG
GAAGGAGACACTCTAAACGCAGTAGCCCTTCAGTACTGCTGTACGGTAGCAGATATCAAAAGAGTTAACA
ATCTCATCAGTGATCAAGACTTTTTTGCTCTTAGGTCTATCAAAATTCCAGTTAAAAGGTTTAGTTCTTT
GACTGAAACTCTTCATCCTCTGAAAGGAAGACACATTTTACATCCTCCACCTGTTCCGTATTTTCAAGAG
CAAGACATTGTGCCAGCTGATGGTTCTCTTTCTTCCAGTGAGTCAGCCGGCAGTTTCCTAAAAGAAGTGG
ACCGAGACATAGAACAAATAGTCAAGTGTACAGACACCAAGAAGGAGAACCTGAATGAAGTCGTGTCTGC
CTTAACAGCACAACAGGTCCGATTTGAACCTGATAACAAAAGCATTCACCGAAAGGATCCGTATTACGGA
GCAGACTGGGGGATTGGTTGGTGGACAGCTGTAGTGATAATGTTGATAGTGGGTATAATAACACCAGTGT
TTTATCTGCTGTATTATGAAATTTTAGCTAAAGTGGATGTTAGTCACCATTCAACAGTGGGTTCTTCACA
CTTGCATCCAGGACTCACACCTCCAACACAGCACAGAGAGATGGAAAATGAAATTGGTCCAACAAAAGGA
ATACCTGTTGGTCAGCAAGATGACCACAAACTATATAGGCAAGACCCTCAGGCACATGATGCTCAACACA
AAACGTAA

Translation (305 aa):
MAGRNQNRTVSLPGIQASGHVLAFGNCTDNDMLEEDAEVYELRSRGKEKVRRSASRDRLDDIVILTKDIQ
EGDTLNAVALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKRFSSLTETLHPLKGRHILHPPPVPYFQE
QDIVPADGSLSSSESAGSFLKEVDRDIEQIVKCTDTKKENLNEVVSALTAQQVRFEPDNKSIHRKDPYYG
ADWGIGWWTAVVIMLIVGIITPVFYLLYYEILAKVDVSHHSTVGSSHLHPGLTPPTQHREMENEIGPTKG
IPVGQQDDHKLYRQDPQAHDAQHKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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