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Report for CCDS2851.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2851.2 Public Homo sapiens 3 WDR82 24 110 108 CCDS HistoryNCBI Gene:80335Re-query CCDS DB by CCDS ID:2851.2See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 2851.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296490.8 ENSP00000296490.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296490.8Link to Ensembl Protein Viewer:ENSP00000296490.3Re-query CCDS DB by Nucleotide ID:ENST00000296490Re-query CCDS DB by Protein ID:ENSP00000296490
Original member Current member NCBI NM_025222.4 NP_079498.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025222.4Link to Protein Sequence:NP_079498.2Re-query CCDS DB by Nucleotide ID:NM_025222Re-query CCDS DB by Protein ID:NP_079498Link to BLAST:NP_079498.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079498.2 313 Q6UXN9 313 100% 0 0

Chromosomal Locations for CCDS 2851.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 52257490 52257519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52258536 52258678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52259197 52259266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52259717 52259872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52260385 52260501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52261380 52261479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52266952 52267018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52270712 52270809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52278201 52278361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGAAGCTGACCGACAGCGTGTTGCGGAGCTTCCGCGTCGCTAAGGTGTTCCGCGAAAACTCGGACAAGA
TTAACTGCTTCGATTTCAGCCCCAACGGCGAGACGGTCATCTCGAGTAGCGACGACGACTCCATCGTGCT
CTATGACTGCCAGGAGGGCAAACCAAAGAGAACCCTGTACAGTAAGAAATATGGTGTGGACCTCATCAGA
TACACTCATGCAGCAAACACAGTTGTTTACAGCTCTAACAAAATAGACGATACTATTCGTTACTTGTCCT
TGCATGACAACAAATACATCAGATACTTTCCTGGACATAGCAAAAGGGTGGTGGCCTTGTCCATGTCACC
TGTGGATGACACTTTCATTTCTGGGTCTCTTGATAAGACCATTCGACTCTGGGATCTCCGGTCTCCTAAC
TGCCAGGGCCTCATGCATCTGCAGGGGAAGCCAGTTTGTTCTTTTGATCCAGAAGGGTTAATTTTCGCTG
CAGGTGTCAACTCTGAAATGGTCAAGCTTTATGACCTTCGTTCTTTTGATAAGGGGCCATTTGCTACCTT
TAAGATGCAGTATGATCGAACTTGTGAGTGGACAGGACTTAAATTCAGCAATGATGGCAAGCTCATCCTC
ATTTCCACCAACGGCAGCTTCATTCGTCTGATTGATGCATTCAAAGGAGTGGTGATGCACACATTTGGGG
GTTATGCCAACAGCAAAGCTGTCACACTGGAGGCTTCATTTACTCCAGACTCTCAGTTTATTATGATTGG
TTCAGAGGATGGCAAGATCCATGTCTGGAATGGAGAGAGCGGTATAAAAGTAGCTGTGTTGGATGGTAAA
CACACAGGCCCGATTACCTGTTTGCAATTCAACCCCAAGTTCATGACTTTTGCCAGTGCGTGTTCCAACA
TGGCCTTTTGGTTGCCCACCATTGATGACTGA

Translation (313 aa):
MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIR
YTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPN
CQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLKFSNDGKLIL
ISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGK
HTGPITCLQFNPKFMTFASACSNMAFWLPTIDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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