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Report for CCDS17431.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17431.1 Public Mus musculus 3 Fga 23 108 98 CCDS HistoryNCBI Gene:14161Re-query CCDS DB by CCDS ID:17431.1Re-query CCDS DB by GeneID:14161See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17431.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029630.14 ENSMUSP00000029630.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029630.14Link to Ensembl Protein Viewer:ENSMUSP00000029630.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000029630Re-query CCDS DB by Protein ID:ENSMUSP00000029630
Original member Current member NCBI NM_010196.4 NP_034326.1 Accepted alive Link to Nucleotide Sequence:NM_010196.4Link to Protein Sequence:NP_034326.1Re-query CCDS DB by Nucleotide ID:NM_010196Re-query CCDS DB by Protein ID:NP_034326Link to BLAST:NP_034326.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034326.1 557 E9PV24-2 557 100% 0 0

Chromosomal Locations for CCDS 17431.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 83026215 83026268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83028522 83028650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83029082 83029265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83030185 83030330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 83030833 83031993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGCTGTCCCTGAGGGTCACCTGCCTCATCTTGAGCGTGGCCAGCACAGTCTGGACTACAGATACCGAAG
ATAAAGGTGAATTCCTATCAGAAGGAGGAGGAGTACGTGGCCCAAGAGTTGTGGAGAGACATCAGAGTCA
ATGCAAGGACTCAGACTGGCCCTTCTGCTCTGATGATGACTGGAACCACAAATGCCCTTCAGGCTGCAGG
ATGAAAGGGTTGATTGACGAAGCCAACCAGGATTTTACAAACAGAATCAACAAGCTCAAAAACTCACTAT
TTGACTTTCAAAGGAACAACAAGGATTCTAACTCACTGACCAGGAATATCATGGAGTATTTGAGAGGGGA
CTTCGCGAATGCCAACAACTTTGATAACACTTATGGGCAAGTGTCAGAAGACCTGAGGCGCAGAATTGAG
ATCCTGAGGCGAAAAGTCATAGAGAAAGCGCAACAGATTCAAGCTCTGCAGAGCAATGTCCGGGCTCAGT
TGATAGACATGAAGCGCCTGGAGGTGGATATTGATATCAAGATCCGCTCTTGCAAAGGGTCCTGCAGCAG
GGCTGTAAACCGTGAGATAAATCTACAGGACTATGAAGGTCACCAAAAACAGCTTCAACAGGTCATCGCT
AAAGAATTGCTTCCTACAAAAGACAGGCAGTACTTGCCAGCACTAAAAATGTCTCCAGTTCCCGACTTGG
TTCCCGGAAGTTTTAAGAGCCAGCTTCAGGAGGCCCCTCCAGAGTGGAAGGCATTAACAGAAATGCGGCA
GATGAGAATGGAGCTGGAGAGACCTGGGAAGGATGGGGGTTCGCGAGGAGATTCACCAGGAGACTCGCGG
GGAGATTCTAGAGGGGACTTTGCAACACGTGGACCAGGGTCAAAGGCAGAAAACCCCACGAACCCTGGAC
CTGGTGGATCTGGGTATTGGCGTCCTGGGAACTCCGGGTCTGGAAGTGATGGAAATCGGAACCCTGGGAC
CACGGGGTCTGATGGCACTGGAGACTGGGGTACCGGAAGCCCTAGACCTGGCTCAGACTCTGGGAACTTT
AGGCCTGCCAACCCTAACTGGGGTGTGTTTTCAGAGTTTGGAGACAGTAGCAGCCCAGCCACAAGAAAAG
AGTATCACACAGGTAAAGCGGTCACTTCTAAAGGAGATAAAGAGCTCCTGATTGGAAAGGAGAAAGTCAC
CTCTTCTGGCACAAGCACCACACATCGTTCATGCTCTAAAACCATTACCAAGACTGTCACAGGTCCTGAT
GGTCGCCGAGAAGTGGTCAAAGAAGTGATCACCTCGGATGATGGCTCAGACTGTGGCGATGCCACCGAGT
TAGACATATCCCACAGTTTTAGCGGCAGTCTCGACGAACTCTCTGAAAGGCATCCTGACCTTTCTGGGTT
TTTTGACAACCACTTTGGTTTAATCTCACCTAACTTCAAAGAATTTGGCAGTAAGACCCATTCTGATTCC
GACATCCTCACAAACATTGAGGACCCCAGCTCCCATGTACCTGAGTTTTCTTCCAGTAGTAAAACCTCAA
CTGTCAAAAAACAAGTAACCAAGACCTATAAAATGGCAGACGAGGCAGGAAGCGAAGCTCACCGGGAAGG
AGAAACTCGCAACACTAAGAGGGGCCGTGCCAGAGCTCGCCCAACGAGAGGTATCGACACTTAA

Translation (557 aa):
MLSLRVTCLILSVASTVWTTDTEDKGEFLSEGGGVRGPRVVERHQSQCKDSDWPFCSDDDWNHKCPSGCR
MKGLIDEANQDFTNRINKLKNSLFDFQRNNKDSNSLTRNIMEYLRGDFANANNFDNTYGQVSEDLRRRIE
ILRRKVIEKAQQIQALQSNVRAQLIDMKRLEVDIDIKIRSCKGSCSRAVNREINLQDYEGHQKQLQQVIA
KELLPTKDRQYLPALKMSPVPDLVPGSFKSQLQEAPPEWKALTEMRQMRMELERPGKDGGSRGDSPGDSR
GDSRGDFATRGPGSKAENPTNPGPGGSGYWRPGNSGSGSDGNRNPGTTGSDGTGDWGTGSPRPGSDSGNF
RPANPNWGVFSEFGDSSSPATRKEYHTGKAVTSKGDKELLIGKEKVTSSGTSTTHRSCSKTITKTVTGPD
GRREVVKEVITSDDGSDCGDATELDISHSFSGSLDELSERHPDLSGFFDNHFGLISPNFKEFGSKTHSDS
DILTNIEDPSSHVPEFSSSSKTSTVKKQVTKTYKMADEAGSEAHREGETRNTKRGRARARPTRGIDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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