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Report for CCDS25446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25446.1 Public Mus musculus 11 Coasy 23 108 98 CCDS HistoryNCBI Gene:71743Re-query CCDS DB by CCDS ID:25446.1Re-query CCDS DB by GeneID:71743See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25446.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001806.9 ENSMUSP00000001806.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001806.9Link to Ensembl Protein Viewer:ENSMUSP00000001806.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000001806Re-query CCDS DB by Protein ID:ENSMUSP00000001806
Original member Current member EBI ENSMUST00000107308.3 ENSMUSP00000102929.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107308.3Link to Ensembl Protein Viewer:ENSMUSP00000102929.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107308Re-query CCDS DB by Protein ID:ENSMUSP00000102929
Original member Current member NCBI NM_001305982.1 NP_001292911.1 Accepted alive Link to Nucleotide Sequence:NM_001305982.1Link to Protein Sequence:NP_001292911.1Re-query CCDS DB by Nucleotide ID:NM_001305982Re-query CCDS DB by Protein ID:NP_001292911Link to BLAST:NP_001292911.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292911.1 563 Q9DBL7 563 100% 0 0

Chromosomal Locations for CCDS 25446.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101083010 101083706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101084316 101084530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101084755 101084886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101085008 101085197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101085282 101085346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101085536 101085620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101085790 101085887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101085998 101086144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101086248 101086310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGGCCGTGTTCCGCTCAGGCCTCCTGGTGCTGACAACGCCGCTGGCCACCCTGGCCGCACGCCTGCCTC
CCATCCTGACCTCGGCGTCCCGCCTGGTGAATCACACCCTCTATGTGCACCTGCAGCCGGGCATGAACCT
GGGGGGACCCGCTCAGCCTCAGGCCAGCCCTGTGCAGGCCACATTTGAGGTTCTGGATTTCATCACGCAC
CTCTACACTGGTGCCGACCTGCACAGGCACCTGGACGTCAGAATTCTACTGACCAATATCCAAACCAAGA
GCACCTTTCTCCCTGTGCTGTCCTCAGTCCAGAATCTGGCCCACCCTCCAGAAGTGGTTCTGACGGACTT
CCAGACCCTGGACGGGAGCCAGTACAACCCTGTTAAACAACAGCTAGAGCGTTATGCCACCAGTTGTTAC
AGCTGTTCTCCACAGCTGGCTTCTGTGTTGCTGTATCCGGATTATGGAACTGGAGAGCTGCCTTTGGAGC
CCCCGAATGCCCTCTTACCCTCTACTATAAGGCCGGCTTCCCCGGTTGCCAGATCTCCAAGGCAGCCTGT
GCGTGGCTACCACCGTGGGGCCGTGGGTGGCACTTTTGACCGCTTGCACAATGCCCACAAAGTGTTGCTC
AGTGTTGCATGTGTACTGGCCCAGGAGCAGCTTGTGGTGGGAGTAGCTGACAAAGATCTGTTGAAGAGCA
AGTTGCTCCCCGAGCTGCTCCAGCCGTATGCAGAGCGCGTGGAGCATCTGACTGAGTTCCTGGTGGACAT
CAAGCCCTCCCTGACCTTTGAACTCGTCCCCCTGCTGGATCCCTATGGGCCTGCTGGGTCCGACCCCACC
TTGGAGTTCCTGGTGGTCAGCGAGGAGACCTACCGTGGGGGGATGGCTGTCAACCGCTTCCGCCTTGAGA
ATGGCAAAGAAGAACTTGCTTTGTACCAGATACAACTGCTGAAGGACCAGAGTCACAATGAAAATGAGGA
GGACAAGGTCAGCTCCTCCAGCTTTCGCCAGCGAATCCTGGGAAACCTGCTTCAGCCTCCAAATGAGAGG
CCGGAGCTCCCGTCAGGTCTCTATGTGCTCGGGCTCACAGGCATCAGTGGCTCTGGGAAAAGCTCGGTAG
CTCAGCGGCTGAAGAACTTGGGAGCATACATCATCGACAGCGACCATCTGGGCCATCGGGCCTATGCTCC
TGGGGGTCCTGCCTACCAGCCTGTGGTGGAGGCCTTTGGAACAGATATTCTCCATAAAGATGGCACCATC
AATAGGAAGGTCCTGGGCAGCCGGGTGTTTGGGAACAAGAAGCAGATGAAGATCCTCACAGATATTGTGT
GGCCAGTTATCGCAAAGCTGGCCCGGGAGGAGATGGATGTGGCTGTGGCTAAGGGAAAAACTCTGTGTGT
AATCGATGCTGCTATGCTGCTTGAAGCTGGCTGGCAGAGTATGGTACACGAGGTGTGGACCGTCGTCATC
CCTGAGACTGAGGCTGTTCGACGCATTGTTGAGAGGGATGGACTAAGTGAGGCAGCCGCTCAGAGCCGGC
TGCAGAGCCAGATGAGCGGCCAGCAGCTGGTAGAGCAGAGCAACGTGGTTCTGAGCACCTTGTGGGAGTC
ACATGTCACACAGAGCCAGGTGGAAAAGGCGTGGAATCTTCTACAGAAGCGCCTCCCTAAGGCTTACCAG
ACCAGGAACTGA

Translation (563 aa):
MAVFRSGLLVLTTPLATLAARLPPILTSASRLVNHTLYVHLQPGMNLGGPAQPQASPVQATFEVLDFITH
LYTGADLHRHLDVRILLTNIQTKSTFLPVLSSVQNLAHPPEVVLTDFQTLDGSQYNPVKQQLERYATSCY
SCSPQLASVLLYPDYGTGELPLEPPNALLPSTIRPASPVARSPRQPVRGYHRGAVGGTFDRLHNAHKVLL
SVACVLAQEQLVVGVADKDLLKSKLLPELLQPYAERVEHLTEFLVDIKPSLTFELVPLLDPYGPAGSDPT
LEFLVVSEETYRGGMAVNRFRLENGKEELALYQIQLLKDQSHNENEEDKVSSSSFRQRILGNLLQPPNER
PELPSGLYVLGLTGISGSGKSSVAQRLKNLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTI
NRKVLGSRVFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVI
PETEAVRRIVERDGLSEAAAQSRLQSQMSGQQLVEQSNVVLSTLWESHVTQSQVEKAWNLLQKRLPKAYQ
TRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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