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Report for CCDS40586.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40586.1 Public Mus musculus 9 Or8a1b 23 108 98 CCDS HistoryNCBI Gene:80706Re-query CCDS DB by CCDS ID:40586.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40586.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000104875.1 ENSMUSP00000100468.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000104875.1Link to Ensembl Protein Viewer:ENSMUSP00000100468.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000104875Re-query CCDS DB by Protein ID:ENSMUSP00000100468
Original member Current member EBI ENSMUST00000211952.2 ENSMUSP00000148600.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211952.2Link to Ensembl Protein Viewer:ENSMUSP00000148600.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211952Re-query CCDS DB by Protein ID:ENSMUSP00000148600
Original member Current member EBI ENSMUST00000215727.1 ENSMUSP00000151178.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215727.1Link to Ensembl Protein Viewer:ENSMUSP00000151178.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215727Re-query CCDS DB by Protein ID:ENSMUSP00000151178
Original member Current member NCBI NM_030553.2 NP_085030.2 Accepted alive Link to Nucleotide Sequence:NM_030553.2Link to Protein Sequence:NP_085030.2Re-query CCDS DB by Nucleotide ID:NM_030553Re-query CCDS DB by Protein ID:NP_085030Link to BLAST:NP_085030.2

Chromosomal Locations for CCDS 40586.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 37711348 37712277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGCTGCAGAGAATCAATCTACAGTGACAGAGTTTATCCTCAGAGGGCTAACTAACAGGCCAGAGCTCC
AG
CTACCCCTCTTGCTCCTCTTCCTGGGGATCTACATAATCACCATGGTGGGAAATCTGGGCATGATCAC
C
TTGATTGGACTCAACTCACAGCTTCACACCCCCATGTACTTCTTCCTCAGTAACCTGTCACTCGTGGAT
CTC
TGCTACTCCTCTGTCATTACCCCTAAAATGCTCATCAACTTTGTGTCCCAAAGAAACCTCATCTCCT
AT
GTGGGGTGCATGTCTCAGCTATACTTCTTCCTGGTTTTCGTCATTGCTGAGTGTTACATGCTCACTGT
G
ATGGCCTATGACCGCTATGTGGCCATCTGTCAACCCTTGCTTTATAACATCATCATGTCTCCTGCCCTC
TGC
TCTCTGCTGGTGGTTTTTGTCTATGCCATGGGACTCATAGGCTCAACAATAGAGACTAGCCTCATGT
TG
AAATTAAACTATTGTGAGGACCTCATCAGCCACTACTTCTGTGACATCCTCCCCCTCATGAAGCTCTC
T
TGCTCTAGTACCTATGATATAGAAATGGCTGTCTTCTTTTTAGCTGGGTTCAACATTATAGTTACCAGC
TTA
ACCGTACTCATTTCCTATGCATTCATCCTGTCCAGCATCCTTCGCATCAGCTCCAATGAGGGCAGGT
CC
AAAGCCTTCAGCACCTGCAGCTCCCACTTTGCAGCTGTGGGCTTGTTCTATGGATCCACAGCATTCAT
G
TACTTAAAGCCTTCTACAGCTAGTTCCCTGGCCCAGGAGAATGTAGCTTCTGTGTTCTACACCACAGTG
ATC
CCCATGCTCAACCCCCTGATCTACAGCCTGAGAAACAAGGAGGTGAAGACCGCACTGGACAAAACAC
TG
AGGAGAAGAGTCTTTTGA


Translation (309 aa):
MAAENQSTVTEFILRGLTNRPELQLPLLLLFLGIYIITMVGNLGMITLIGLNSQLHTPMYFFLSNLSLVD
L
CYSSVITPKMLINFVSQRNLISYVGCMSQLYFFLVFVIAECYMLTVMAYDRYVAICQPLLYNIIMSPAL
C
SLLVVFVYAMGLIGSTIETSLMLKLNYCEDLISHYFCDILPLMKLSCSSTYDIEMAVFFLAGFNIIVTS
L
TVLISYAFILSSILRISSNEGRSKAFSTCSSHFAAVGLFYGSTAFMYLKPSTASSLAQENVASVFYTTV
I
PMLNPLIYSLRNKEVKTALDKTLRRRVF




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser