NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23306.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23306.1 Public Mus musculus 9 Car12 23 108 98 CCDS HistoryNCBI Gene:76459Re-query CCDS DB by CCDS ID:23306.1Re-query CCDS DB by GeneID:76459See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23306.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071889.12 ENSMUSP00000071786.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071889.12Link to Ensembl Protein Viewer:ENSMUSP00000071786.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071889Re-query CCDS DB by Protein ID:ENSMUSP00000071786
Original member Current member NCBI NM_178396.5 NP_848483.3 Accepted alive Link to Nucleotide Sequence:NM_178396.5Link to Protein Sequence:NP_848483.3Re-query CCDS DB by Nucleotide ID:NM_178396Re-query CCDS DB by Protein ID:NP_848483Link to BLAST:NP_848483.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848483.3 354 Q8CI85 354 99.7175% 0 1

Chromosomal Locations for CCDS 23306.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 66713849 66713933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66717560 66717580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66746470 66746649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66747576 66747721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66750930 66751025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66751943 66752006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66752287 66752444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66753695 66753821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66762403 66762432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66763247 66763334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66764288 66764357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGCCTCACCGCAGCCTGCGCGCGACTGTCGTCCTCCTGTTGGTGATCCTTAAGAAGCAGCCTTCCAGCT
CAGCCCCACTCAACGGATCCAAGTGGACCTATGTTGGTCCTGCTGGGGAAAAGAACTGGTCCAAGAAGTA
CCCATCGTGTGGAGGCCTCCTGCAGTCCCCGATAGACCTACATAGCGACATCCTTCAGTATGATGCTAGC
CTCGCACCCCTCCAGTTCCAAGGTTACAATGTGTCTGTTGAAAAGCTGTTGAACCTGACCAATGATGGCC
ATTCAGTGAGACTGAATCTGAACTCAGACATGTACATCCAGGGTCTCCAGCCTCACCACTACAGAGCAGA
GCAGCTGCACTTGCACTGGGGGAACCGCAATGACCCCCATGGCTCTGAACACACCGTGAGTGGGAAGCAC
TTTGCTGCCGAGCTGCACATTGTCCATTATAACTCAGACCTGTACCCTGACTTCAGCACCGCCAGTGACA
AGTCCGAAGGCCTCGCTGTCCTTGCTGTTCTTATTGAGATAGGCTCCGCCAATCCATCATATGACAAGAT
CTTCAGCCATCTTCAACATGTTAAGTATAAAGGCCAACAAGTGCTCATCCCAGGCTTCAACATTGAAGAA
CTTCTGCCCGAGAGCCCTGGCGAGTATTACCGCTATGAAGGGTCCCTGACTACACCTCCTTGCTACCCTA
CCGTGCTCTGGACAGTTTTCCGAAACCCTGTGCAGATTTCCCAGGAGCAGCTGCTGGCTTTGGAGACAGC
TCTGTACTTCACACACATGGATGATCCTACCCCCAGAGAAATGATCAACAACTTCCGGCAGGTCCAGAAG
TTCGATGAGAGGCTGGTGTATATCTCCTTCCGACAAGGACTGCTTACCAACACAGGACTGAGTTTGGGTA
TCATCCTTTCAGTGGCCCTGGCTGGCGTTCTTGGCATCTCCATTGTTCTGGCAGTGTCTATTTGGCTCTT
CAAAAGGAAGAAGAGCAAAAAAGGTGACAACAAGGGAGTCATTTATAAACCAGCCATCAAGAAGGAGGCT
GAGGTCCACGCCTGA

Translation (354 aa):
MPHRSLRATVVLLLVILKKQPSSSAPLNGSKWTYVGPAGEKNWSKKYPSCGGLLQSPIDLHSDILQYDAS
LAPLQFQGYNVSVEKLLNLTNDGHSVRLNLNSDMYIQGLQPHHYRAEQLHLHWGNRNDPHGSEHTVSGKH
FAAELHIVHYNSDLYPDFSTASDKSEGLAVLAVLIEIGSANPSYDKIFSHLQHVKYKGQQVLIPGFNIEE
LLPESPGEYYRYEGSLTTPPCYPTVLWTVFRNPVQISQEQLLALETALYFTHMDDPTPREMINNFRQVQK
FDERLVYISFRQGLLTNTGLSLGIILSVALAGVLGISIVLAVSIWLFKRKKSKKGDNKGVIYKPAIKKEA
EVHA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH