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Report for CCDS20529.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20529.1 Public Mus musculus 6 Spsb2 23 108 98 CCDS HistoryNCBI Gene:14794Re-query CCDS DB by CCDS ID:20529.1Re-query CCDS DB by GeneID:14794See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20529.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047760.9 ENSMUSP00000041585.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047760.9Link to Ensembl Protein Viewer:ENSMUSP00000041585.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000047760Re-query CCDS DB by Protein ID:ENSMUSP00000041585
Original member Current member EBI ENSMUST00000052727.4 ENSMUSP00000060124.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052727.4Link to Ensembl Protein Viewer:ENSMUSP00000060124.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000052727Re-query CCDS DB by Protein ID:ENSMUSP00000060124
Original member NCBI NM_001306050.1 NP_001292979.1 Updated not alive Link to Nucleotide Sequence:NM_001306050.1Link to Protein Sequence:NP_001292979.1Re-query CCDS DB by Nucleotide ID:NM_001306050Re-query CCDS DB by Protein ID:NP_001292979
Current member NCBI NM_001306050.2 NP_001292979.1 Accepted alive Link to Nucleotide Sequence:NM_001306050.2Link to Protein Sequence:NP_001292979.1Re-query CCDS DB by Nucleotide ID:NM_001306050Re-query CCDS DB by Protein ID:NP_001292979Link to BLAST:NP_001292979.1
Original member NCBI NM_001306051.1 NP_001292980.1 Updated not alive Link to Nucleotide Sequence:NM_001306051.1Link to Protein Sequence:NP_001292980.1Re-query CCDS DB by Nucleotide ID:NM_001306051Re-query CCDS DB by Protein ID:NP_001292980
Current member NCBI NM_001306051.2 NP_001292980.1 Accepted alive Link to Nucleotide Sequence:NM_001306051.2Link to Protein Sequence:NP_001292980.1Re-query CCDS DB by Nucleotide ID:NM_001306051Re-query CCDS DB by Protein ID:NP_001292980Link to BLAST:NP_001292980.1
Original member NCBI NM_001306052.1 NP_001292981.1 Updated not alive Link to Nucleotide Sequence:NM_001306052.1Link to Protein Sequence:NP_001292981.1Re-query CCDS DB by Nucleotide ID:NM_001306052Re-query CCDS DB by Protein ID:NP_001292981
Current member NCBI NM_001306052.2 NP_001292981.1 Accepted alive Link to Nucleotide Sequence:NM_001306052.2Link to Protein Sequence:NP_001292981.1Re-query CCDS DB by Nucleotide ID:NM_001306052Re-query CCDS DB by Protein ID:NP_001292981Link to BLAST:NP_001292981.1
Original member NCBI NM_013539.2 NP_038567.1 Updated not alive Link to Nucleotide Sequence:NM_013539.2Link to Protein Sequence:NP_038567.1Re-query CCDS DB by Nucleotide ID:NM_013539Re-query CCDS DB by Protein ID:NP_038567
Current member NCBI NM_013539.3 NP_038567.1 Accepted alive Link to Nucleotide Sequence:NM_013539.3Link to Protein Sequence:NP_038567.1Re-query CCDS DB by Nucleotide ID:NM_013539Re-query CCDS DB by Protein ID:NP_038567Link to BLAST:NP_038567.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292979.1 264 O88838-1 264 100% 0 0
NP_001292980.1 264 O88838-1 264 100% 0 0
NP_001292981.1 264 O88838-1 264 100% 0 0
NP_038567.1 264 O88838-1 264 100% 0 0

Chromosomal Locations for CCDS 20529.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124809306 124809969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124810269 124810399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGGGCCAGACGGCCCTGGCAAGGGGCAGCAGCAGCACCCCTACCTCGCAGGCTCTGTACTCGGACTTCT
CTCCTCCCGAGGGCTTGGAGGAGCTCCTGTCTGCTCCCCCTCCTGACCTGGTTGCCCAACGGCACCACGG
CTGGAACCCCAAGGATTGCTCCGAGAACATCGATGTCAAGGAAGGGGGTCTGTGCTTTGAGCGGCGCCCT
GTGGCCCAGAGCACTGATGGAGTCCGGGGGAAACGGGGCTATTCGAGAGGTCTGCACGCCTGGGAGATCA
GCTGGCCCCTGGAGCAAAGGGGCACACACGCCGTGGTGGGCGTGGCCACCGCCCTCGCCCCGCTGCAGGC
TGACCACTATGCGGCGCTTTTGGGCAGCAACAGCGAGTCCTGGGGCTGGGATATTGGGCGGGGAAAATTG
TATCATCAGAGTAAGGGCCTCGAGGCCCCCCAGTATCCAGCTGGACCTCAGGGTGAGCAGCTAGTGGTGC
CAGAGAGACTGCTGGTGGTTCTGGACATGGAGGAGGGGACTCTTGGCTACTCTATTGGGGGCACGTACCT
GGGACCAGCCTTCCGTGGACTGAAGGGGAGGACCCTCTATCCCTCTGTAAGTGCTGTTTGGGGCCAGTGC
CAGGTCCGCATCCGCTACATGGGCGAAAGAAGAGTGGAGGAACCACAATCCCTTCTGCACCTGAGCCGCC
TGTGTGTGCGCCATGCTCTGGGGGACACCCGGCTGGGTCAAATATCCACTCTGCCTTTGCCCCCTGCCAT
GAAGCGCTATCTGCTCTACAAATGA

Translation (264 aa):
MGQTALARGSSSTPTSQALYSDFSPPEGLEELLSAPPPDLVAQRHHGWNPKDCSENIDVKEGGLCFERRP
VAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAALLGSNSESWGWDIGRGKL
YHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLKGRTLYPSVSAVWGQC
QVRIRYMGERRVEEPQSLLHLSRLCVRHALGDTRLGQISTLPLPPAMKRYLLYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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