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Report for CCDS88340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88340.1 Public Mus musculus 12 Trappc6b 23 108 98 CCDS HistoryNCBI Gene:78232Re-query CCDS DB by CCDS ID:88340.1Re-query CCDS DB by GeneID:78232See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88340.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000217863.1 ENSMUSP00000151772.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217863.1Link to Ensembl Protein Viewer:ENSMUSP00000151772.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217863Re-query CCDS DB by Protein ID:ENSMUSP00000151772
Original member Current member NCBI NM_001306217.1 NP_001293146.1 Accepted alive Link to Nucleotide Sequence:NM_001306217.1Link to Protein Sequence:NP_001293146.1Re-query CCDS DB by Nucleotide ID:NM_001306217Re-query CCDS DB by Protein ID:NP_001293146Link to BLAST:NP_001293146.1

Chromosomal Locations for CCDS 88340.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 59043662 59043676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59048123 59048206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59050268 59050385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59051641 59051708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59061156 59061236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (366 nt):
ATGGCGGACGAGGCGTTGTTTTTGCTTCTCCATAACGAGATGGTGTCCGGAGTGTACAAGTCCGCCGAGC
AGGGGGAAGTGGAAAATGGAAGGTGTGTTACTAAGCTGGAGAGCATGGGGTTCCGAGTGGGGCAAGGACT
GATAGAAAGGTTTACGAAAGATACTGCAAGGTTCAAGGATGAATTAGACATCATGAAGTTCATCTGTAAA
GATTTTTGGACTACAGTATTCAAGAAACAGATTGACAATCTGAGGACAAATCATCAGGGCATATATGTAC
TTCAGGACAACAAATTTCGACTACTCATTCAGCTGTCTGCAGGAAAACAGTATTTAGAACATGCGTCCAA
GGCAAATTTCAGGTGA

Translation (121 aa):
MADEALFLLLHNEMVSGVYKSAEQGEVENGRCVTKLESMGFRVGQGLIERFTKDTARFKDELDIMKFICK
DFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLSAGKQYLEHASKANFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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