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Report for CCDS25932.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25932.1 Public Mus musculus 12 Trappc6b 23 108 98 CCDS HistoryNCBI Gene:78232Re-query CCDS DB by CCDS ID:25932.1Re-query CCDS DB by GeneID:78232See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25932.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021380.9 ENSMUSP00000021380.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021380.9Link to Ensembl Protein Viewer:ENSMUSP00000021380.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021380Re-query CCDS DB by Protein ID:ENSMUSP00000021380
Original member Current member NCBI NM_030057.3 NP_084333.1 Accepted alive Link to Nucleotide Sequence:NM_030057.3Link to Protein Sequence:NP_084333.1Re-query CCDS DB by Nucleotide ID:NM_030057Re-query CCDS DB by Protein ID:NP_084333Link to BLAST:NP_084333.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084333.1 158 Q9D289 158 100% 0 0

Chromosomal Locations for CCDS 25932.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 59043645 59043676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59044253 59044346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59048123 59048206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59050268 59050385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59051641 59051708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59061156 59061236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGGCGGACGAGGCGTTGTTTTTGCTTCTCCATAACGAGATGGTGTCCGGAGTGTACAAGTCCGCCGAGC
AGGGGGAAGTGGAAAATGGAAGGTGTGTTACTAAGCTGGAGAGCATGGGGTTCCGAGTGGGGCAAGGACT
GATAGAAAGGTTTACGAAAGATACTGCAAGGTTCAAGGATGAATTAGACATCATGAAGTTCATCTGTAAA
GATTTTTGGACTACAGTATTCAAGAAACAGATTGACAATCTGAGGACAAATCATCAGGGCATATATGTAC
TTCAGGACAACAAATTTCGACTACTCATTCAGCTGTCTGCAGGAAAACAGTATTTAGAACATGCGTCCAA
GTATCTAGCATTCACATGTGGCTTAATCAGAGGTGGTTTGTCGAACTTGGGAATAAAAAGTATTGTAACA
GCTGAAGTCTCTTCAATGCCTGCCTGCAAATTTCAGGTGATGATACAGAAGCTGTAG

Translation (158 aa):
MADEALFLLLHNEMVSGVYKSAEQGEVENGRCVTKLESMGFRVGQGLIERFTKDTARFKDELDIMKFICK
DFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVT
AEVSSMPACKFQVMIQKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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