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Report for CCDS15101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15101.1 Public Mus musculus 1 Slc19a3 23 108 98 CCDS HistoryNCBI Gene:80721Re-query CCDS DB by CCDS ID:15101.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15101.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045560.14 ENSMUSP00000041683.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045560.14Link to Ensembl Protein Viewer:ENSMUSP00000041683.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000045560Re-query CCDS DB by Protein ID:ENSMUSP00000041683
Original member Current member EBI ENSMUST00000164473.1 ENSMUSP00000126646.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164473.1Link to Ensembl Protein Viewer:ENSMUSP00000126646.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164473Re-query CCDS DB by Protein ID:ENSMUSP00000126646
Original member NCBI NM_030556.2 NP_085033.2 Updated not alive Link to Nucleotide Sequence:NM_030556.2Link to Protein Sequence:NP_085033.2Re-query CCDS DB by Nucleotide ID:NM_030556Re-query CCDS DB by Protein ID:NP_085033
Current member NCBI NM_030556.3 NP_085033.2 Accepted alive Link to Nucleotide Sequence:NM_030556.3Link to Protein Sequence:NP_085033.2Re-query CCDS DB by Nucleotide ID:NM_030556Re-query CCDS DB by Protein ID:NP_085033Link to BLAST:NP_085033.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_085033.2 488 Q99PL8 488 100% 0 0

Chromosomal Locations for CCDS 15101.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 83013819 83013989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83014703 83014844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83019332 83019524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83022334 83023141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83026226 83026378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGGACTCCAGCTGCAGAACTCCACCGAGCAACTCTTGGGTTTATCCCACTGTGATACTCTGCTTGTTTG
GGTTTTTCTCCATGTTCAGGCCTTCAGAGGCATTCTTAATCCCATTCCTGTCAGAACCCAGCAAGAATCT
CACCAGCCCAGAGATGACAAATGAGATCCTTCCTGTTTGGACATATTCTTACCTGGCAACGCTGCCACCC
GTGTTTGTCCTCACCGACTACCTGCGCTACAAACCAGTCATCATGCTACACGTTGTGGCCTTCGCCACTA
GCTACCTGTTTCTCTTGTTTGGCCAAGGTGTGATGCTCATGCAAACAGCTGAGTTCTTTTTTGGGGTTGT
CTCGGCCACAGAGATAGCCTACTTTGCCTACATATACAGCATGGTCAGCCCAGAACACTATCAGAAAGTG
AGCAGCTACTGTCGGAGTATCACACTGGTGGCCTACACAGCAGGCTCAGTGTTAGCCCAGCTCCTGGTAT
CCCTGACGAACCTGCCATACTCTAGCCTTTTTTATATATCCTTGGCCTGTGTCTCTGTGGCTTTCTTTTT
CTCACTTTTTCTACCAATGCCTAAGAAGAGCATGTTTTTCCATGCAAAGTCCGATAGAGACGATTGTCCA
AAGCCACTGGAACAATGTACTGTGCCCAAGGAAGCCCAGAGCAACAGAACTCACTCAGAATTGTTTGCCA
ATTCAAAGAATCTAGAGGACAGAGAGATGAGCAACCCAGATCCAGAAAATTCAGCTTTGAGACACTTTGC
GCATTGGTTCCAGGATCTGAAGGAGTGCTACTCCTCAAAGCACCTTGTTTACTGGTCCCTCTGGTGGGCT
TTTGCCACAGCAGGTTATAACCAAATCTTGAACTATGTTCAAGTCCTATGGGAACACAAGGCACCCTCCC
AAGATTCTTCCATCTATAATGGAGCAGTAGAGGCCATAGCAACATTTGGAGGAGCTTTGGCTTCATTCTC
AGTGGGCTATCTGAAGGTCAACTGGGATCTTCTCGGAGAGCTGGGTCTGGCTGTCTTCTCAGCTGTCATC
GCAGGATCTCTGTTTCTCATGAATTACTCACGCAGCATCTGGGTGTGCTATGCTGGGTATCTACTGGTCA
AGTCGAGCTATTCGTTTCTTATAACCATCGCAGTCTTTCAGATTGCAGTTAACCTGAGCTTAGAACGTTA
TGCCCTGGTGTTCGGCATAGACACCTTTATCGCCTTGGTGATTCAGACCATCATGACTATGATTGTGGTA
GATCAAAGAGGGCTCCAACTGCCAGTCACTACTCAGTTTTTAGTTTATGGGAGTTACTTCGCTGTCATTG
CGGGGGTCTTCCTAATGAGAAGCATATACATTCTCTGCTCAGCTAAGTGCCGAAAGGAAGTACAGAACCT
TGCTACCACCCGGAGCCCTAATGAGCCACACCCACAAGAGCCAAGCAATGTGTCAACAAAGTTCTAA

Translation (488 aa):
MDSSCRTPPSNSWVYPTVILCLFGFFSMFRPSEAFLIPFLSEPSKNLTSPEMTNEILPVWTYSYLATLPP
VFVLTDYLRYKPVIMLHVVAFATSYLFLLFGQGVMLMQTAEFFFGVVSATEIAYFAYIYSMVSPEHYQKV
SSYCRSITLVAYTAGSVLAQLLVSLTNLPYSSLFYISLACVSVAFFFSLFLPMPKKSMFFHAKSDRDDCP
KPLEQCTVPKEAQSNRTHSELFANSKNLEDREMSNPDPENSALRHFAHWFQDLKECYSSKHLVYWSLWWA
FATAGYNQILNYVQVLWEHKAPSQDSSIYNGAVEAIATFGGALASFSVGYLKVNWDLLGELGLAVFSAVI
AGSLFLMNYSRSIWVCYAGYLLVKSSYSFLITIAVFQIAVNLSLERYALVFGIDTFIALVIQTIMTMIVV
DQRGLQLPVTTQFLVYGSYFAVIAGVFLMRSIYILCSAKCRKEVQNLATTRSPNEPHPQEPSNVSTKF


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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