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Report for CCDS38242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38242.1 Public Mus musculus 2 Vps16 23 108 98 CCDS HistoryNCBI Gene:80743Re-query CCDS DB by CCDS ID:38242.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38242.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028900.10 ENSMUSP00000028900.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028900.10Link to Ensembl Protein Viewer:ENSMUSP00000028900.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000028900Re-query CCDS DB by Protein ID:ENSMUSP00000028900
Original member Current member NCBI NM_030559.3 NP_085036.3 Accepted alive Link to Nucleotide Sequence:NM_030559.3Link to Protein Sequence:NP_085036.3Re-query CCDS DB by Nucleotide ID:NM_030559Re-query CCDS DB by Protein ID:NP_085036Link to BLAST:NP_085036.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_085036.3 839 Q920Q4-1 839 99.2849% 0 6

Chromosomal Locations for CCDS 38242.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 130424395 130424447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130437622 130437710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130437915 130438012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130438097 130438225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130438307 130438451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130438569 130438684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130438783 130438905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130439046 130439101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130439436 130439525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130439620 130439714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130439841 130439917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130440231 130440362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130440452 130440579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130440707 130440742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130440900 130441008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130441165 130441299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130441395 130441503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130441608 130441705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130441794 130441901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130442173 130442250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130442335 130442504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130442587 130442683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130443296 130443399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130443514 130443658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2520 nt):
ATGGACTGTTACACTGCGAACTGGAATCCACTCGGGGACTCTGCCTTTTACAGGAAGTATGAGCTGTACA
GCATGGACTGGGACCTGAAGGAGGAGCTCAAGGATTGCCTGGTGGCTGCTGCACCCTATGGGGGTCCCAT
TGCTCTACTGAGGAACTGTTGGAGAAAAGAGAAAGCTGCCAGCGTGCGGCCAGTACTGGAGATCTACTCT
GCATCTGGCTTACCACTGGCTAGCCTGCTGTGGAAGAGTGGGCCTGTGGTGGCCCTCGGCTGGTCAGCTG
AGGAGGAGCTGCTCTGTGTGCAAGAAGATGGTGCAGTGCTAGTTTATGGCCTTCATGGAGACTTCCGGAG
GCACTTCAGCATGGGCAATGAAGTGCTTCAGAACCGTGTCCTGGATGCCCGGATTTTTCACACTGAGTTT
GGTTCAGGGGTGGCCATCCTTACAGGAGCCTATCGCTTTACTCTGAGTGCCAATGTGGGTGACCTCAAAC
TCCGTCGGATGCCAGAGGTGCCAGGTCTGCAAAGTGCACCCTCATGTTGGACCACACTGTGCCACGACCG
AGTACCACACATTCTTCTGGCTGTAGGACCCGATCTTTACCTTCTGGATCATGCTACCTGCTCTGCAGTG
ACACCTGCTGGCTTAGCCCCAGGAGTGAGCAGCTTCCTACAGATGGCTGTATCCTTCACGTATCGTTACC
TGGCACTCTTCACAGACACAGGCTACATCTGGATGGGGACAGCATCACTCAAGGAGAAGCTGTGTGAGTT
CAACTGCAACATCCGGGCTCCCCCGAAGCAGATGGTCTGGTGTAGCCGTCCTCGGAGCAAGGAAAGGGCT
GTTGTTGTGGCCTGGGAGAGGCGGCTGATGGTGGTGGGCAATGCGCCTGAAAGCATCCAGTTTGTGCTCG
ATGAGGACTCCTACTTAGTGCCTGAGCTTGATGGGGTCCGCATCTTCTCCCGAAGCACCCATGAGTTCCT
GCATGAAGTCCCAGTGGCCAGTGAAGAGATCTTCAAAATTGCCTCAATGGCCCCTGGAGCACTGCTGTTA
GAGGCCCAGAAGGAATATGAGAAAGAGAGCCAGAAAGCAGATGAGTACCTGCGGGAGATCCAGGAACTGG
GCCAGCTGATCCAGGCTGTGCAGCAGTGCATTGAGGCTGCAGGACATGAGCACCAGCCAGACATGCAAAA
GAGTCTGCTCAGGGCGGCTTCATTTGGAAAGTGTTTCCTTGACAGATTTCCACCTGACAGCTTCGTGCAC
ATGTGTCAGGACCTTCGAGTGCTCAATGCTATTAGAGACTACCACATTGGGATCCCTCTCACCTACACCC
AATACAAGCAGCTCACCATCCAGGTGCTGCTAGACAGGCTTGTGTTGCGGAGGCTTTATCCCCTGGCTAT
CCAGATATGCGAGTACCTGCGCCTTCCTGAAGTCCAGGGTGTCAGCAGGATCCTAGCCCACTGGGCCTGC
TACAAGGTGCAGCAGAAAGATGTCTCAGATGAAGATGTAGCACGGGCTATTAATCAGAAGCTGGGTGACA
CGCCTGGTGTTTCATACTCTGACATTGCTGCGAGGGCCTATGGCTGTGGCCGCACTGAACTGGCCATTAA
GCTGCTGGAGTATGAGCCACGCTCAGGGGAGCAGGTACCTCTTCTCCTAAAGATGAAGAGGAGCAAACTG
GCACTGAGCAAGGCTATTGAGAGTGGAGACACTGACCTGGTGTTTACAGTGTTGCTGCACCTAAAGAATG
AACTCAACCGAGGAGACTTTTTCATGACTCTCCGGAACCAACCCATGGCCCTGAGTTTGTATCGACAGTT
CTGTAAGCATCAGGAGCTAGACACTCTGAAGGACCTTTACAATCAGGACGACAATCACCAGGAGTTGGGC
AGCTTCCACATCAGAGCCAGCTATGCCGCTGAAGAGCGTATTGAAGGGCGAGTGGCAGCTCTGCAGACGG
CAGCTGATGCCTTCTACAAAGCCAAGAATGAATTTGCAGCCAAGGCCACAGAGGATCAAATGAGGCTCCT
GCGGATACAGCGACGCCTAGAGGATGAGCTAGGGGGCAGGTTCCTAGACCTATCTCTACACGACACTGTC
ACCACTCTTATCCTTGGAGGCCACAACAAGCGGGCAGAGCAGCTGGCACGTGACTTTCGCATCCCTGATA
AGAGACTATGGTGGTTAAAGCTGGCTGCCCTGGCAGATTTGGAAGATTGGGAGGAGCTGGAGAAGTTTTC
CAAAAGCAAGAAATCACCGATTGGTTACCTGCCCTTTGTAGAGATCTGCATGAAACAGCATAACAAACAT
GAGGCCAAGAAGTATGCTTCCCGTGTGGGCCCTGAACAAAAGGTCAAGGCTTTGCTTCTTGTTGGGGATG
TGGCTCAGGCTGCAGAGGTGGCTATTGAGCACCGGAATGAAACAGAGCTGAGCCTCGTTTTGTCCCACTG
CACTGGAGCCACAGATGGGGCCATAGCTGACAAGATTCAGCGGGCCAGGGCACAAGCCCAGAAGAAGTGA

Translation (839 aa):
MDCYTANWNPLGDSAFYRKYELYSMDWDLKEELKDCLVAAAPYGGPIALLRNCWRKEKAASVRPVLEIYS
ASGLPLASLLWKSGPVVALGWSAEEELLCVQEDGAVLVYGLHGDFRRHFSMGNEVLQNRVLDARIFHTEF
GSGVAILTGAYRFTLSANVGDLKLRRMPEVPGLQSAPSCWTTLCHDRVPHILLAVGPDLYLLDHATCSAV
TPAGLAPGVSSFLQMAVSFTYRYLALFTDTGYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERA
VVVAWERRLMVVGNAPESIQFVLDEDSYLVPELDGVRIFSRSTHEFLHEVPVASEEIFKIASMAPGALLL
EAQKEYEKESQKADEYLREIQELGQLIQAVQQCIEAAGHEHQPDMQKSLLRAASFGKCFLDRFPPDSFVH
MCQDLRVLNAIRDYHIGIPLTYTQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILAHWAC
YKVQQKDVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKL
ALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSLYRQFCKHQELDTLKDLYNQDDNHQELG
SFHIRASYAAEERIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRIQRRLEDELGGRFLDLSLHDTV
TTLILGGHNKRAEQLARDFRIPDKRLWWLKLAALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKH
EAKKYASRVGPEQKVKALLLVGDVAQAAEVAIEHRNETELSLVLSHCTGATDGAIADKIQRARAQAQKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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