NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS80373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80373.1 Public Mus musculus 5 Mvk 23 108 98 CCDS HistoryNCBI Gene:17855Re-query CCDS DB by CCDS ID:80373.1Re-query CCDS DB by GeneID:17855See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80373.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112239.8 ENSMUSP00000107858.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112239.8Link to Ensembl Protein Viewer:ENSMUSP00000107858.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112239Re-query CCDS DB by Protein ID:ENSMUSP00000107858
Original member NCBI NM_001306205.1 NP_001293134.1 Updated not alive Link to Nucleotide Sequence:NM_001306205.1Link to Protein Sequence:NP_001293134.1Re-query CCDS DB by Nucleotide ID:NM_001306205Re-query CCDS DB by Protein ID:NP_001293134
Current member NCBI NM_001306205.2 NP_001293134.1 Accepted alive Link to Nucleotide Sequence:NM_001306205.2Link to Protein Sequence:NP_001293134.1Re-query CCDS DB by Nucleotide ID:NM_001306205Re-query CCDS DB by Protein ID:NP_001293134Link to BLAST:NP_001293134.1

Chromosomal Locations for CCDS 80373.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 114445402 114445479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114446159 114446306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114450241 114450421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114450706 114450861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114452365 114452468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114452880 114452925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114455397 114455487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114455890 114456006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114458895 114459048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114460043 114460191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGTTGTCAGAAGCCCTGCTGGTGTCCGCCCCGGGGAAGGTCATCCTCCATGGAGAACACGCTGTGGTCC
ATGGCAAGGTCGCTCTGGCAGCGGCCTTGAACTTGAGAACTTTCCTCCTGCTGCGACCGCAGAGCAATGG
GAAAGTGAGCGTCAATTTACCCAACATCGGTATTAAGCAGGTGTGGGATGTGGGCATGCTTCAGCGACTG
GACACGAGCTTTCTTGGCCTCTCACCCACCTGTTTGTTTGCCCGTGTGACAGAGCAAGGTGATGTCTCGG
TACCCACCTTGGAGCAACTGGAGAAGCTAAAGAAGATGGGGGACCTCCCCAGAGACCGTGCAGGCAATGA
AGGCATGGCTCTGCTTGCCTTTCTCTACCTGTACCTGGCAATCTGCCGGAAGCAGAGGACACTCCCGAGC
CTGGACATGGTGGTGTGGTCGGAACTTCCCCCCGGGGCAGGCTTGGGCTCCAGCGCCGCCTACTCTGTGT
GTCTGGCAGCCGCCCTCCTGACTGCCTGTGAGGAGGTCTCCAACCCGCTCAAGGACGGGGTCTCCGTCAG
CAGGTGGCCCGAGGAAGATCTGAAGTCAATCAACAAGTGGGCCTTCGAAGGGGAGAGAGTGATCCATGGG
AACCCTTCTGGTGTGGACAATGCCGTCAGCACCTGGGGCGGAGCCCTGCGCTTCCAGCAAGGGACGATGT
CTTCCTTGAAGAGCCTCCCGTCTCTGCAGATCCTGCTCACCAACACCAAGGTCCCGCGGAGTACCAAGGC
CCTTGTGGCTGCTGTCAGAAGCAGGCTGACCAAGTTCCCTGAGATTGTGGCCCCGCTGCTGACCTCCATT
GACGCAATATCCCTGGAGTGTGAGCGCGTGCTAGGGGAGATGGTGGCAGCTCCAGTTCCGGAACAGTACC
TCGTACTAGAAGAGCTGATAGACATGAACCAGCACCATCTGAATGCTCTCGGGGTGGGCCACAACTCCCT
GGACCAGCTCTGCCAAGTAACGGCAGCACACGGACTGCACAGCAAGCTGACGGGCGCTGGCGGTGGCGGC
TGTGGCATCACCCTCCTGAAGCCAGGTCTAGAGCAAGCCACAGTGGAGGCAGCCAAGCAGGCCCTGACCA
GCTGCGGGTTTGACTGCTGGGAGACCAGCATCGGCGCACCCGGAGTTTCCACACACTCAGCTGCAGCTGT
AGGGGACCCTGTCCGACAAGCCCTGGGCCTCTGA

Translation (407 aa):
MLSEALLVSAPGKVILHGEHAVVHGKVALAAALNLRTFLLLRPQSNGKVSVNLPNIGIKQVWDVGMLQRL
DTSFLGLSPTCLFARVTEQGDVSVPTLEQLEKLKKMGDLPRDRAGNEGMALLAFLYLYLAICRKQRTLPS
LDMVVWSELPPGAGLGSSAAYSVCLAAALLTACEEVSNPLKDGVSVSRWPEEDLKSINKWAFEGERVIHG
NPSGVDNAVSTWGGALRFQQGTMSSLKSLPSLQILLTNTKVPRSTKALVAAVRSRLTKFPEIVAPLLTSI
DAISLECERVLGEMVAAPVPEQYLVLEELIDMNQHHLNALGVGHNSLDQLCQVTAAHGLHSKLTGAGGGG
CGITLLKPGLEQATVEAAKQALTSCGFDCWETSIGAPGVSTHSAAAVGDPVRQALGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH