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Report for CCDS17965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17965.1 Public Mus musculus 4 Ccne2 23 108 98 CCDS HistoryNCBI Gene:12448Re-query CCDS DB by CCDS ID:17965.1Re-query CCDS DB by GeneID:12448See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17965.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108324.3 ENSMUSP00000103960.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108324.3Link to Ensembl Protein Viewer:ENSMUSP00000103960.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108324Re-query CCDS DB by Protein ID:ENSMUSP00000103960
Original member Current member EBI ENSMUST00000170901.7 ENSMUSP00000130693.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170901.7Link to Ensembl Protein Viewer:ENSMUSP00000130693.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170901Re-query CCDS DB by Protein ID:ENSMUSP00000130693
Original member NCBI NM_001037134.2 NP_001032211.1 Updated not alive Link to Nucleotide Sequence:NM_001037134.2Link to Protein Sequence:NP_001032211.1Re-query CCDS DB by Nucleotide ID:NM_001037134Re-query CCDS DB by Protein ID:NP_001032211
Current member NCBI NM_001037134.3 NP_001032211.1 Accepted alive Link to Nucleotide Sequence:NM_001037134.3Link to Protein Sequence:NP_001032211.1Re-query CCDS DB by Nucleotide ID:NM_001037134Re-query CCDS DB by Protein ID:NP_001032211Link to BLAST:NP_001032211.1
Original member NCBI NM_001282943.1 NP_001269872.1 Updated not alive Link to Nucleotide Sequence:NM_001282943.1Link to Protein Sequence:NP_001269872.1Re-query CCDS DB by Nucleotide ID:NM_001282943Re-query CCDS DB by Protein ID:NP_001269872
Current member NCBI NM_001282943.2 NP_001269872.1 Accepted alive Link to Nucleotide Sequence:NM_001282943.2Link to Protein Sequence:NP_001269872.1Re-query CCDS DB by Nucleotide ID:NM_001282943Re-query CCDS DB by Protein ID:NP_001269872Link to BLAST:NP_001269872.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032211.1 404 Q9Z238 404 100% 0 0
NP_001269872.1 404 Q9Z238 404 100% 0 0

Chromosomal Locations for CCDS 17965.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 11192704 11192717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11192815 11192911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11192993 11193046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11193926 11194077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11195020 11195155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11197153 11197299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11198729 11198824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11199297 11199431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11201305 11201416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11202190 11202347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11202985 11203098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGTCAAGACGCAGTAGCCGTTTACAAGCTAAGCAACATGCCCAGCCCAACCAGCCAGACTCTCCGCAAG
AAACCCAGATAATTCAGGCCAAGAAGAGAAAAACAGCACAGGATGTCAAAAAAAGAAAAGAGGAGATCAC
CAAGAAGCATCAGTATGAGATTAGGAATTGTTGGCCACCTGTACTGTCTGGAGGAATCAGCCCTTGCATT
ATCATTGAAACACCCCATAAAGAAATAGGAACAAGTGACTTCTCTAGATTTACAAATTACAGATTTAAAA
ATCTTTTTATTAATCCCTCACCTCTGCCAGATTTAAGCTGGGCATGTTCACAGGAGGTTTGGCAAAACAT
GTTACAAAAGGAAAACAGATACGTGCATGACAAACATTTTCAAGTTCTGCATTCTGACCTGGAACCACAG
ATGAGGTCAATACTTTTAGACTGGCTTTTAGAGGTTTGTGAAGTATACACTCTTCATAGGGAGACATTTT
ACCTTGCCCAAGACTTTTTTGACAGATTTATGTTGACACAAAAGGATGTAAATAAAAATATGCTTCAACT
CATTGGGATTACCTCATTGTTCATTGCTTCCAAACTTGAGGAAATCTACGCTCCTAAACTCCAAGAGTTT
GCTTACGTCACTGATGGTGCTTGCAGTGAAGTAGATATCTTAAAGATGGAACTCAATATATTAAAGGCTT
TAAAATGGGAACTTTGTCCAGTAACAGTCATCTCCTGGTTGAATCTTTTTCTTCAAGTTGATGCTGTTAA
AGATGTTCCTAAGGTTCTTCTACCTCAATATTCTCAGGAGACGTTCATCCAGATAGCTCAGCTTTTAGAT
CTGTGCATTCTAGCCATCGACTCTTTAGAATTTCAATACAGAATTCTGGCTGCTGCCGCCTTATGTCATT
TTACCTCCATTGAAGTGGTTAAGAAAGCTTCAGGTTTGGAATGGGATGACATCTCGGAATGTGTAGACTG
GATGGTGCCTTTTGTTAGTGTTGTAAAAAGTGTGAGTCCAGTGAAGCTGAAGACTTTTAAGAAGATACCC
ATGGAAGATAGACACAATATCCAGACACACACAAATTATTTGGCTTTGCTGAATGAAGTAAACTATGTGA
ACATCTACAGAAAAGGAGGGCAGCTGTCACCAGTGTGTAATGGAGGCATTATGACACCACCAAAGAGTAC
TGAAAAACCACCAGGAAAACACTGA

Translation (404 aa):
MSRRSSRLQAKQHAQPNQPDSPQETQIIQAKKRKTAQDVKKRKEEITKKHQYEIRNCWPPVLSGGISPCI
IIETPHKEIGTSDFSRFTNYRFKNLFINPSPLPDLSWACSQEVWQNMLQKENRYVHDKHFQVLHSDLEPQ
MRSILLDWLLEVCEVYTLHRETFYLAQDFFDRFMLTQKDVNKNMLQLIGITSLFIASKLEEIYAPKLQEF
AYVTDGACSEVDILKMELNILKALKWELCPVTVISWLNLFLQVDAVKDVPKVLLPQYSQETFIQIAQLLD
LCILAIDSLEFQYRILAAAALCHFTSIEVVKKASGLEWDDISECVDWMVPFVSVVKSVSPVKLKTFKKIP
MEDRHNIQTHTNYLALLNEVNYVNIYRKGGQLSPVCNGGIMTPPKSTEKPPGKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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