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Report for CCDS20873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20873.1 Public Mus musculus 7 Psg27 23 108 98 CCDS HistoryNCBI Gene:545925Re-query CCDS DB by CCDS ID:20873.1Re-query CCDS DB by GeneID:545925See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20873.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094794.4 ENSMUSP00000092388.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094794.4Link to Ensembl Protein Viewer:ENSMUSP00000092388.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094794Re-query CCDS DB by Protein ID:ENSMUSP00000092388
Original member Current member NCBI NM_001037168.1 NP_001032245.1 Accepted alive Link to Nucleotide Sequence:NM_001037168.1Link to Protein Sequence:NP_001032245.1Re-query CCDS DB by Nucleotide ID:NM_001037168Re-query CCDS DB by Protein ID:NP_001032245Link to BLAST:NP_001032245.1

Chromosomal Locations for CCDS 20873.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 18556852 18557135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18560340 18560699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18561738 18562097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18564974 18565330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 18567063 18567126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGGAGGCATCCTCTGAGCTTCTCAGCAATGGGTGTACCCCCTGGCAAAGGGTTCTGCTCACAGCCTCCC
TCTTTACCTGCTGGCTCCTCTCCACTACTGCCCGAGTCACCATCCATTCACCGCTCCAAGTGGTTGAAGG
AGAAAATGTTCTTCTACGAGTTGACAATCTGCCCGAGAATCTTCTAGCCTTTTCCTGGTATAGAGGCCTG
AAAAATTGGCAGCTTGCAATTGCACTACATTTACTGGACTATAACACAAGTATGACAGGGCCTGATCACA
GTGATAGAGAGATATTGTACAGCAATGGATCCCTATGGATCCAAAATGTCACCAAGGAGGACACAGGATA
TTATACTCTTCGAACCATAAGCAAACATGGAGAACTGGTATCAAATACATCCACATTTCTTCAGGTGTAC
TCCTCTCATTTCACCTGTGGGCGCCCTTCCTTCCCTGCCAAGCTCACTATTGAATCAGTGCCGCCCAGAG
TTGCTGAAGGAGGAAGTGTTTTTCTCCGTGTTCACAATCTTCCAGAGTATCTTCAATTATTTTTTTGGTA
CAAAGGGGTGATTATGACTAACAAGGTTGAGATTGTCAGACACAGAACACTCAAGAATTTAAGCGATCCA
GGCCCTGCCCACAGCGGTAGAGAGACAGTGTTCAGCAATGGATCCCTGCTGCTCCAGAATGTCACCTGGA
AAGACACTGGATTCTACACCCTACAAACTCTGAATCGATATCGGAAAATGGAACTAGCACACATTTACCT
TCAGGTTGACACCTCCCTTTCCCCATGCTGTGACACTCTTGACTCTGCCCAACTCAGGATCGATCCAGTG
ACTCGGCATGCTACTGAAGGGGAAAGTGTTCTTTTCCAGGTCTATAATCTGCCAAAAGATCCACAAGCCT
TTTCCTGGTACAAAGGCGTAGATAGCAATCCATACTTCAAAACTGTAGAATATAGCAAAGCAAGGTATTC
CATGCTCATTGGCCAATCATACAGCAGAAGAGAGATTGGGTACCTTAATGGATCCCTGCTGCTCCAGGAT
TTGACTGAGAAAGACTCTGGCTTGTACACACTAATAACAATAGACAGCAATGTGAAAGTTGAAACCTTGC
ACGTGCAAATCAACGTCCACAAGCTTGTGACACAGCCTGTTGTGAGAGTCACAGACAGCACAGTTAGAGT
ACAGAGCCCAGTGGTCTTCACTTGCTTCTCAGACAACACTGGGGTCTCCATCCGTTGGCTCTTCAACAAT
CAGAGTCTTCAGCTCACAGAGAGGATGAGCCTGTCTCCATCAAAGTGCCAACTCAGGATACATACTGTGA
GGAAGGAGGATGCTGGAGAGTACCAATGTGAGGCCTTCAACCCAGCCAACTCAAAGACCAGTCTTCCAGT
CAACCTGGCCGTGATGAATGAGTGA

Translation (474 aa):
MEASSELLSNGCTPWQRVLLTASLFTCWLLSTTARVTIHSPLQVVEGENVLLRVDNLPENLLAFSWYRGL
KNWQLAIALHLLDYNTSMTGPDHSDREILYSNGSLWIQNVTKEDTGYYTLRTISKHGELVSNTSTFLQVY
SSHFTCGRPSFPAKLTIESVPPRVAEGGSVFLRVHNLPEYLQLFFWYKGVIMTNKVEIVRHRTLKNLSDP
GPAHSGRETVFSNGSLLLQNVTWKDTGFYTLQTLNRYRKMELAHIYLQVDTSLSPCCDTLDSAQLRIDPV
TRHATEGESVLFQVYNLPKDPQAFSWYKGVDSNPYFKTVEYSKARYSMLIGQSYSRREIGYLNGSLLLQD
LTEKDSGLYTLITIDSNVKVETLHVQINVHKLVTQPVVRVTDSTVRVQSPVVFTCFSDNTGVSIRWLFNN
QSLQLTERMSLSPSKCQLRIHTVRKEDAGEYQCEAFNPANSKTSLPVNLAVMNE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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