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Report for CCDS77181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77181.1 Public Homo sapiens 18 SLC14A1 24 110 108 CCDS HistoryNCBI Gene:6563Re-query CCDS DB by CCDS ID:77181.1Re-query CCDS DB by GeneID:6563See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77181.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535474.5 ENSP00000441998.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535474.5Link to Ensembl Protein Viewer:ENSP00000441998.1Re-query CCDS DB by Nucleotide ID:ENST00000535474Re-query CCDS DB by Protein ID:ENSP00000441998
Original member Current member EBI ENST00000589322.7 ENSP00000466273.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000589322.7Link to Ensembl Protein Viewer:ENSP00000466273.3Re-query CCDS DB by Nucleotide ID:ENST00000589322Re-query CCDS DB by Protein ID:ENSP00000466273
Original member Current member NCBI NM_001308279.2 NP_001295208.1 Accepted alive Link to Nucleotide Sequence:NM_001308279.2Link to Protein Sequence:NP_001295208.1Re-query CCDS DB by Nucleotide ID:NM_001308279Re-query CCDS DB by Protein ID:NP_001295208Link to BLAST:NP_001295208.1

Chromosomal Locations for CCDS 77181.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 45734329 45734402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45736456 45736648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45739163 45739310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45739528 45739662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45748376 45748425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45749778 45749951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGCTGTCTTTTCGGACAAGGGAGACTATTTCTGGTGGCTGTTACTCCCTGTATGTGCTATGTCCATGA
CTTGCCCAATTTTCTCAAGTGCATTGAATTCCATGCTCAGCAAATGGGACCTCCCCGTCTTCACCCTCCC
TTTCAACATGGCGTTGTCAATGTACCTTTCAGCCACAGGACATTACAATCCATTCTTTCCAGCCAAACTG
GTCATACCTATAACTACAGCTCCAAATATCTCCTGGTCTGACCTCAGTGCCCTGGAGTTGTTGAAATCTA
TACCAGTGGGAGTTGGTCAGATCTATGGCTGTGATAATCCATGGACAGGGGGCATTTTCCTGGGAGCCAT
CCTACTCTCCTCCCCACTCATGTGCCTGCATGCTGCCATAGGATCATTGCTGGGCATAGCAGCGGGACTC
AGTCTTTCAGCCCCATTTGAGGACATCTACTTTGGACTCTGGGGTTTCAACAGCTCTCTGGCCTGCATTG
CAATGGGAGGAATGTTCATGGCGCTCACCTGGCAAACCCACCTCCTGGCTCTTGGCTGTGCCCTGTTCAC
GGCCTATCTTGGAGTCGGCATGGCAAACTTTATGGCTGAGGTTGGATTGCCAGCTTGTACCTGGCCCTTC
TGTTTGGCCACGCTATTGTTCCTCATCATGACCACAAAAAATTCCAACATCTACAAGATGCCCCTCAGTA
AAGTTACTTATCCTGAAGAAAACCGCATCTTCTACCTGCAAGCCAAGAAAAGAATGGTGGAAAGCCCTTT
GTGA

Translation (257 aa):
MAVFSDKGDYFWWLLLPVCAMSMTCPIFSSALNSMLSKWDLPVFTLPFNMALSMYLSATGHYNPFFPAKL
VIPITTAPNISWSDLSALELLKSIPVGVGQIYGCDNPWTGGIFLGAILLSSPLMCLHAAIGSLLGIAAGL
SLSAPFEDIYFGLWGFNSSLACIAMGGMFMALTWQTHLLALGCALFTAYLGVGMANFMAEVGLPACTWPF
CLATLLFLIMTTKNSNIYKMPLSKVTYPEENRIFYLQAKKRMVESPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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