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Report for CCDS30955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30955.1 Public Homo sapiens 1 SHCBP1L 24 110 108 CCDS HistoryNCBI Gene:81626Re-query CCDS DB by CCDS ID:30955.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30955.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367547.8 ENSP00000356518.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367547.8Link to Ensembl Protein Viewer:ENSP00000356518.3Re-query CCDS DB by Nucleotide ID:ENST00000367547Re-query CCDS DB by Protein ID:ENSP00000356518
Original member Current member NCBI NM_030933.4 NP_112195.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030933.4Link to Protein Sequence:NP_112195.2Re-query CCDS DB by Nucleotide ID:NM_030933Re-query CCDS DB by Protein ID:NP_112195Link to BLAST:NP_112195.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112195.2 653 Q9BZQ2-3 653 100% 0 0

Chromosomal Locations for CCDS 30955.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 182899983 182900234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182903039 182903161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182904180 182904430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182905496 182905649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182929647 182929752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182939176 182939394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182939467 182939553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182940329 182940543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182951318 182951467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182952729 182953133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1962 nt):
ATGGCGTCGGGCTCCAAGGCCTCGGTGCCCGCGGACTCATTCCGCACCATCAGCCCGGACAGGCGAGGCG
AGAAGTCCGCCTCCGCTGTCTCCGGGGACACGGCGGCCGCGACCACCCTGAAGGGCACCGCGATCCCAGT
GCGGTCGGTGGTGGCCTCCCCTCGCCCGGTGAAGGGGAAAGCGGGCCGGGAGACGGCCAGGCTGCGGCTC
CAGCGCCTGCCCGCGGCTCAGGCCGAGGACACGGGAGAGGCGGCGGCGGCGGCGGCGGAGGAGCCCCTGC
TGCCAGTGCCTGAGGATGAAGAGGAGGCGCAGCCCCTGCCCCCAGTCTGCGTGTCCCGTATGAGGGGGAT
GTGGCGGGACGAGAAGGTGTCGCTGTATTGCGACGAAGTGCTGCAGGACTGTAAGGCAGAAGATGCTGAT
GAAGTTATGGGTAAATACCTATCAGAAAAATTAAAGTTGAAAGACAAATGGCTTGGAGTCTGGAAGACTA
ATCCCAGTGTATTCTTTGTGAAATATGAAGAAGCTTCTATCCCTTTTGTTGGTATATTGGTTGAGGTAAC
TTGTGAACCATACCAAGACTCATCATCTCGTTTCAAAGTTACTGTTTCTGTTGCTGAGCCCTTTTCTTCC
AACATTGCAAATATTCCAAGAGATTTGGTTGATGAGATTTTGGAGGAACTGGAACACAGTGTGCCTCTTT
TGGAAGTGTATCCTGTTGAGGGACAAGATACTGATATACATGTTATTGCTTTGGCCTTGGAAGTTGTCAG
GTTTTTTTATGACTTTCTTTGGAGAGACTGGGATGATGAAGAAAGTTGTGAGAATTATACTGCACTTATT
GAAGAAAGAATTAATTTGTGGTGTGATATACAGGATGGAACAATACCTGGTCCTATCGCACAACGTTTTA
AAAAAACTTTGGAGAAATATAAAAACAAACGTGTCGAGCTCATTGAGTATCAGAGCAATATTAAAGAAGA
TCCATCTGCAGCAGAGGCTGTTGAATGCTGGAAAAAATACTATGAGATAGTCATGCTCTGTGGATTACTG
AAAATGTGGGAAGATTTACGCCTCCGAGTTCATGGACCTTTCTTTCCAAGAATTCTGAGGCGTAGGAAAG
GAAAAAGAGAATTTGGAAAGACTATAACACATATTGTAGCAAAAATGATGACTACTGAAATGATAAAGGA
TTTATCTTCAGACACACTTCTCCAACAGCATGGTGATTTGGATTTGGCTTTGGATAATTGTTATAGTGGA
GATACAGTAATAATTTTTCCAGGAGAATATCAAGCTGCAAATCTTGCTTTGTTGACAGATGACATCATTA
TAAAGGGAGTTGGAAAGAGAGAGGAAATTATGATTACTTCTGAACCTTCTCGTGACAGTTTTGTGGTGTC
CAAAGCTGACAATGTGAAACTAATGCATCTATCTTTGATACAACAAGGGACGGTTGATGGTATCGTGGTG
GTGGAGTCTGGTCACATGACTCTAGAAAACTGCATATTAAAATGTGAAGGAACAGGAGTGTGTGTTCTTA
CAGGGGCTGCTTTGACAATTACAGACAGTGAAATAACTGGCGCCCAGGGTGCTGGTGTTGAACTGTATCC
TGGAAGCATAGCTATTTTGGAAAGAAATGAAATTCATCACTGTAATAACCTCAGAACCAGTAACAGTTCA
AAAAGCACCTTAGGTGGAGTTAATATGAAGGTTCTTCCAGCACCCAAATTGAAGATGACTAATAATCATA
TTTATAGCAACAAAGGCTATGGAGTAAGCATTCTTCAACCAATGGAACAGTTTTTTATCGTAGCAGAAGA
AGCTCTCAACAAAAGGGCTTCTTCAGGAGATAAAAAAGATGATAAAATGCTCTTCAAAGTAATGCAAAAT
CTGAATCTGGAAATGAATAATAATAAGATAGAAGCAAACGTCAAGGGGGATATCAGAATAGTCACAAGTT
AA

Translation (653 aa):
MASGSKASVPADSFRTISPDRRGEKSASAVSGDTAAATTLKGTAIPVRSVVASPRPVKGKAGRETARLRL
QRLPAAQAEDTGEAAAAAAEEPLLPVPEDEEEAQPLPPVCVSRMRGMWRDEKVSLYCDEVLQDCKAEDAD
EVMGKYLSEKLKLKDKWLGVWKTNPSVFFVKYEEASIPFVGILVEVTCEPYQDSSSRFKVTVSVAEPFSS
NIANIPRDLVDEILEELEHSVPLLEVYPVEGQDTDIHVIALALEVVRFFYDFLWRDWDDEESCENYTALI
EERINLWCDIQDGTIPGPIAQRFKKTLEKYKNKRVELIEYQSNIKEDPSAAEAVECWKKYYEIVMLCGLL
KMWEDLRLRVHGPFFPRILRRRKGKREFGKTITHIVAKMMTTEMIKDLSSDTLLQQHGDLDLALDNCYSG
DTVIIFPGEYQAANLALLTDDIIIKGVGKREEIMITSEPSRDSFVVSKADNVKLMHLSLIQQGTVDGIVV
VESGHMTLENCILKCEGTGVCVLTGAALTITDSEITGAQGAGVELYPGSIAILERNEIHHCNNLRTSNSS
KSTLGGVNMKVLPAPKLKMTNNHIYSNKGYGVSILQPMEQFFIVAEEALNKRASSGDKKDDKMLFKVMQN
LNLEMNNNKIEANVKGDIRIVTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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