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Report for CCDS10960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10960.1 Public Homo sapiens 16 MAP1LC3B 24 110 108 CCDS HistoryNCBI Gene:81631Re-query CCDS DB by CCDS ID:10960.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10960.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268607.10 ENSP00000268607.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000268607.10Link to Ensembl Protein Viewer:ENSP00000268607.5Re-query CCDS DB by Nucleotide ID:ENST00000268607Re-query CCDS DB by Protein ID:ENSP00000268607
Original member Current member EBI ENST00000650688.1 ENSP00000498476.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650688.1Link to Ensembl Protein Viewer:ENSP00000498476.1Re-query CCDS DB by Nucleotide ID:ENST00000650688Re-query CCDS DB by Protein ID:ENSP00000498476
Original member Current member NCBI NM_022818.5 NP_073729.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022818.5Link to Protein Sequence:NP_073729.1Re-query CCDS DB by Nucleotide ID:NM_022818Re-query CCDS DB by Protein ID:NP_073729Link to BLAST:NP_073729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073729.1 125 Q9GZQ8 125 100% 0 0

Chromosomal Locations for CCDS 10960.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 87392428 87392467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87398815 87398870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87402175 87402281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87402923 87403097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGCCGTCGGAGAAGACCTTCAAGCAGCGCCGCACCTTCGAACAAAGAGTAGAAGATGTCCGACTTATTC
GAGAGCAGCATCCAACCAAAATCCCGGTGATAATAGAACGATACAAGGGTGAGAAGCAGCTTCCTGTTCT
GGATAAAACAAAGTTCCTTGTACCTGACCATGTCAACATGAGTGAGCTCATCAAGATAATTAGAAGGCGC
TTACAGCTCAATGCTAATCAGGCCTTCTTCCTGTTGGTGAACGGACACAGCATGGTCAGCGTCTCCACAC
CAATCTCAGAGGTGTATGAGAGTGAGAAAGATGAAGATGGATTCCTGTACATGGTCTATGCCTCCCAGGA
GACGTTCGGGATGAAATTGTCAGTGTAA

Translation (125 aa):
MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRR
LQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGMKLSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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