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Report for CCDS4301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4301.1 Public Homo sapiens 5 TIGD6 24 110 108 CCDS HistoryNCBI Gene:81789Re-query CCDS DB by CCDS ID:4301.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4301.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296736.4 ENSP00000296736.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296736.4Link to Ensembl Protein Viewer:ENSP00000296736.3Re-query CCDS DB by Nucleotide ID:ENST00000296736Re-query CCDS DB by Protein ID:ENSP00000296736
Original member Current member EBI ENST00000515406.2 ENSP00000425318.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515406.2Link to Ensembl Protein Viewer:ENSP00000425318.2Re-query CCDS DB by Nucleotide ID:ENST00000515406Re-query CCDS DB by Protein ID:ENSP00000425318
Original member Current member NCBI NM_001243253.2 NP_001230182.1 Accepted alive Link to Nucleotide Sequence:NM_001243253.2Link to Protein Sequence:NP_001230182.1Re-query CCDS DB by Nucleotide ID:NM_001243253Re-query CCDS DB by Protein ID:NP_001230182Link to BLAST:NP_001230182.1
Original member Current member NCBI NM_030953.4 NP_112215.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030953.4Link to Protein Sequence:NP_112215.1Re-query CCDS DB by Nucleotide ID:NM_030953Re-query CCDS DB by Protein ID:NP_112215Link to BLAST:NP_112215.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230182.1 521 Q17RP2 521 100% 0 0
NP_112215.1 521 Q17RP2 521 100% 0 0

Chromosomal Locations for CCDS 4301.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 149994783 149996348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGGCAAACAAGGGGAACAAGAAGCGTCGGCAGTTCTCTCTGGAGGAGAAAATGAAAGTTGTGGGAGCTG
TAGACTCAGGCAAGAGGAAAGGTGATGTGGCAAAAGAATTTGGTATCACTCCCTCTACTTTATCTACATT
CTTAAAGGATCGCACCAAATTTGAAGAAAAGGTGCGGGAGGCATCCGTGGGACCCCAGCGGAAAAGGATG
AGGAGCGCTCTTTATGATGACATTGATAAGGCTGTTTTTGCTTGGTTTCAAGAAATCCATGCCAAAAACA
TTCTTGTGACTGGTTCTGTCATTCGGAAAAAAGCACTAAACTTGGCCAACATGCTTGGCTATGACAATTT
TCAAGCAAGTGTGGGCTGGCTGAACAGATTTAGAGATCGCCACGGAATTGCTTTGAAAGCAGTCTGTAGA
GAAGATAGTGACAGGTTAATGAATGGTCTAGGAATAGATAAGATTAATGAGTGGCATGCAGGGGAAATTA
TAAAACTGATTGCTGACTACAGCCCAGATGATATCTTTAATGCTGATGAGACAGGAGTGTTTTTCCAGTT
GCTTCCCCAGCACACACTTGCTGCTAAAGGAGACCACTGTAGAGGGGGCAAGAAAGCAAAGCAGCGGTTG
ACAGCACTCTTTTGTTGCAATGCCTCGGGGACTGAAAAAATGAGACCATTGATTGTTGGTAGGTCAGCCA
GCCCACACTGCCTCAAGAACATTCATTCCCTCCCTTGTGATTACCGAGCCAACCAGTGGGCTTGGATGAC
AAGGGATCTGTTTAATGAGTGGCTGATGCAAGTGGATGCCAGGATGAAGAGGGCGGAACGCCGGATCCTC
TTGCTCATAGACAACTGCTCTGCTCATAACATGCTTCCACACTTGGAAAGGATTCAGGTTGGGTATCTGC
CCTCCAACTGTACTGCTGTCCTGCAGCCACTGAATCTTGGCATAATTCACACCATGAAAGTACTGTACCA
GAGCCACCTTCTAAAACAGATCCTCCTCAAGCTCAACAGCAGTGAGGATCAAGAAGAGGTGGACATCAAG
CAGGCCATCGACATGATTGCTGCAGCGTGGTGGTCAGTCAAGCCATCCACAGTGGTGAAATGTTGGCAGA
AGGCAGGCATCGTCCCTATGGAATTTGCAGAATGTGACACAGAATCAGCAGCCAGTGAACCAGACATTGC
CATTGAAAAGTTGTGGCACACAGTGGCTATTGCCACCTGTGTCCCAAATGAAGTAAATTTCCAGGACTTT
GTTACTGCAGATGATGATCTCATTATCTCTCAGGACACAGACATCATCCAGGACATGGTGGCTGGCGAAA
ATACCAGTGAAGCAGGAAGTGAAGATGAAGGGGAGGTATCTTTACCAGAGCAACCAAAAGTCACCATCAC
AGAAGCCATATCAAGTGTACAGAAACTTAGACAGTTCCTTTCCACTTGTGTAGACATTCCTGATGCCATT
TTTGGACAATTAAATGGCATAGATGAATATTTAATGAAAAGAGTGACACAAACCCTTATTGATTCCAAAA
TTACAGATTTCCTCCAAACAAAATAA

Translation (521 aa):
MANKGNKKRRQFSLEEKMKVVGAVDSGKRKGDVAKEFGITPSTLSTFLKDRTKFEEKVREASVGPQRKRM
RSALYDDIDKAVFAWFQEIHAKNILVTGSVIRKKALNLANMLGYDNFQASVGWLNRFRDRHGIALKAVCR
EDSDRLMNGLGIDKINEWHAGEIIKLIADYSPDDIFNADETGVFFQLLPQHTLAAKGDHCRGGKKAKQRL
TALFCCNASGTEKMRPLIVGRSASPHCLKNIHSLPCDYRANQWAWMTRDLFNEWLMQVDARMKRAERRIL
LLIDNCSAHNMLPHLERIQVGYLPSNCTAVLQPLNLGIIHTMKVLYQSHLLKQILLKLNSSEDQEEVDIK
QAIDMIAAAWWSVKPSTVVKCWQKAGIVPMEFAECDTESAASEPDIAIEKLWHTVAIATCVPNEVNFQDF
VTADDDLIISQDTDIIQDMVAGENTSEAGSEDEGEVSLPEQPKVTITEAISSVQKLRQFLSTCVDIPDAI
FGQLNGIDEYLMKRVTQTLIDSKITDFLQTK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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