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Report for CCDS30298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30298.1 Public Mus musculus X Efnb1 23 108 98 CCDS HistoryNCBI Gene:13641Re-query CCDS DB by CCDS ID:30298.1Re-query CCDS DB by GeneID:13641See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30298.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052839.6 ENSMUSP00000050716.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052839.6Link to Ensembl Protein Viewer:ENSMUSP00000050716.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000052839Re-query CCDS DB by Protein ID:ENSMUSP00000050716
Original member Current member NCBI NM_010110.5 NP_034240.1 Accepted alive Link to Nucleotide Sequence:NM_010110.5Link to Protein Sequence:NP_034240.1Re-query CCDS DB by Nucleotide ID:NM_010110Re-query CCDS DB by Protein ID:NP_034240Link to BLAST:NP_034240.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034240.1 345 P52795 345 100% 0 0

Chromosomal Locations for CCDS 30298.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 99136886 99137013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 99145292 99145569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 99146478 99146570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 99146752 99146877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 99147115 99147527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGGCCCGGCCTGGGCAGCGTTGGCTCAGCAAGTGGCTTGTGGCTATGGTCGTGCTGACGCTGTGCCGGC
TTGCCACGCCGTTGGCCAAGAACCTGGAGCCCGTGTCCTGGAGCTCTCTTAACCCTAAGTTCCTAAGTGG
GAAGGGCTTGGTGATCTACCCGAAGATTGGAGACAAGCTGGACATCATCTGCCCCCGAGCAGAAGCAGGG
CGGCCCTACGAGTACTACAAGCTGTACCTGGTGCGGCCAGAGCAGGCGGCTGCTTGCAGCACTGTGCTTG
ATCCCAATGTACTGGTCACTTGCAACAAGCCACACCAGGAAATCCGCTTCACCATCAAGTTCCAAGAGTT
CAGCCCCAACTACATGGGCCTGGAATTCAAAAAGTACCACGATTACTACATTACATCAACGTCCAATGGG
AGCTTGGAGGGACTGGAGAACCGGGAGGGAGGTGTGTGTCGCACCCGCACTATGAAGATCGTTATGAAGG
TTGGGCAAGATCCAAATGCTGTGACACCCGAGCAGTTGACTACCAGCCGGCCAAGCAAGGAGTCAGACAA
CACTGTCAAGACAGCCACACAGGCTCCTGGTCGGGGATCCCAGGGTGACTCTGACGGCAAGCATGAGACT
GTGAACCAGGAAGAGAAGAGTGGCCCAGGTGCAGGTGGCGGTGGCAGCGGGGACTCTGACAGCTTCTTCA
ACTCCAAGGTAGCATTGTTCGCAGCCGTCGGCGCCGGCTGTGTCATCTTCCTGCTCATCATCATCTTCTT
GACAGTCCTACTACTCAAGCTCCGCAAGCGCCATCGCAAGCATACACAGCAGCGGGCGGCTGCCCTCTCG
CTCAGTACCCTAGCCAGCCCCAAAGGGGGTAGTGGTACAGCGGGCACCGAGCCCAGCGACATCATCATCC
CCTTACGGACTACAGAGAACAACTACTGCCCCCACTATGAGAAGGTGAGTGGGGACTACGGGCATCCTGT
CTACATCGTCCAGGAGATGCCCCCTCAGAGCCCGGCGAACATCTACTACAAGGTTTGA

Translation (345 aa):
MARPGQRWLSKWLVAMVVLTLCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRAEAG
RPYEYYKLYLVRPEQAAACSTVLDPNVLVTCNKPHQEIRFTIKFQEFSPNYMGLEFKKYHDYYITSTSNG
SLEGLENREGGVCRTRTMKIVMKVGQDPNAVTPEQLTTSRPSKESDNTVKTATQAPGRGSQGDSDGKHET
VNQEEKSGPGAGGGGSGDSDSFFNSKVALFAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAALS
LSTLASPKGGSGTAGTEPSDIIIPLRTTENNYCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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