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Report for CCDS35567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35567.1 Public Mus musculus 1 Sf3b1 23 108 98 CCDS HistoryNCBI Gene:81898Re-query CCDS DB by CCDS ID:35567.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35567.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027127.13 ENSMUSP00000027127.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027127.13Link to Ensembl Protein Viewer:ENSMUSP00000027127.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027127Re-query CCDS DB by Protein ID:ENSMUSP00000027127
Original member Current member NCBI NM_031179.2 NP_112456.2 Accepted alive Link to Nucleotide Sequence:NM_031179.2Link to Protein Sequence:NP_112456.2Re-query CCDS DB by Nucleotide ID:NM_031179Re-query CCDS DB by Protein ID:NP_112456Link to BLAST:NP_112456.2

Chromosomal Locations for CCDS 35567.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 54987334 54987492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54987939 54988155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54990303 54990575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54994330 54994461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54995366 54995486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54996817 54996928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54997012 54997194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54998038 54998259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 54999627 54999752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55000015 55000161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55000242 55000387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55000644 55000914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55001012 55001098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55001383 55001562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55003104 55003205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55003293 55003490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55005802 55005923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55006171 55006383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55007480 55007717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55012102 55012272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55014483 55014562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55016376 55016490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55016779 55016883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55019234 55019400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55027339 55027366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3915 nt):
ATGGCGAAGATCGCCAAGACTCACGAAGATATCGAAGCACAGATTCGAGAAATTCAAGGCAAGAAGGCAG
CTCTTGATGAAGCCCAAGGAGTGGGCCTTGATTCCACAGGTTATTATGACCAAGAAATTTATGGTGGAAG
TGATAGCAGATTTGCTGGATATGTGACATCAATTGCTGCAACTGAACTTGAAGATGATGACGATGACTAC
TCATCATCCACGAGCTTGCTCGGTCAGAAGAAGCCTGGATATCATGCCCCCGTGGCGTTGCTTAATGATA
TACCACAGTCAACAGAGCAGTATGATCCATTTGCTGAGCATCGTCCTCCAAAGATTGCCGATCGGGAAGA
TGAATACAAAAAGCATAGGCGGACCATGATAATTTCCCCAGAGCGTCTTGATCCTTTTGCAGATGGAGGG
AAGACTCCCGATCCTAAAATGAATGCTAGAACCTACATGGATGTTATGCGAGAACAACATTTGACTAAGG
AAGAGAGAGAAATTAGGCAACAACTAGCAGAAAAAGCTAAAGCTGGAGAACTAAAAGTCGTCAATGGAGC
AGCAGCATCCCAGCCTCCCTCAAAACGAAAACGGCGCTGGGATCAGACCGCTGACCAGACTCCTGGTGCC
ACTCCCAAAAAGCTATCGAGTTGGGATCAGGCAGAGACCCCTGGGCATACCCCATCTTTAAGATGGGATG
AGACACCGGGTCGTGCAAAAGGAAGTGAAACACCTGGCGCAACCCCAGGCTCAAAAATATGGGACCCTAC
ACCGAGTCATACACCTGCGGGAGCTGCTACTCCTGGGCGAGGCGACACACCAGGCCATGCAACCCCGGGC
CATGGTGGTGCAACTTCCAGTGCTCGTAAAAACAGATGGGATGAGACCCCCAAAACAGAAAGAGATACTC
CTGGGCATGGAAGTGGATGGGCTGAGACTCCTCGAACAGATCGAGGTGGAGACTCTATTGGTGAAACACC
AACTCCTGGAGCAAGTAAAAGAAAGTCTCGTTGGGATGAAACGCCGGCGAGTCAAATGGGTGGAAGCACT
CCTGTTCTGACTCCAGGAAAAACACCAATTGGCACACCAGCCATGAACATGGCTACCCCGACTCCAGGTC
ACATAATGAGCATGACACCTGAACAGCTTCAGGCGTGGCGGTGGGAGAGAGAAATTGATGAACGAAACCG
CCCACTTTCTGATGAAGAATTAGATGCTATGTTCCCAGAAGGATATAAGGTACTTCCCCCTCCAGCTGGT
TATGTTCCTATTCGAACTCCAGCTCGAAAGCTGACAGCAACTCCTACACCTTTGGGTGGTATGACTGGTT
TCCACATGCAAACTGAAGACAGAACTATGAAAAGTGTCAATGACCAGCCATCTGGGAATCTTCCATTTTT
AAAACCTGATGACATTCAGTACTTTGATAAACTATTGGTTGATGTAGATGAATCAACACTTAGTCCAGAA
GAACAAAAAGAAAGAAAAATAATGAAGTTGCTTTTAAAAATTAAGAATGGTACACCTCCAATGAGAAAGG
CTGCCTTACGTCAGATTACTGATAAAGCTCGAGAATTTGGAGCTGGACCACTGTTTAACCAGATTCTTCC
TCTGTTGATGTCCCCTACACTTGAGGATCAAGAGCGACATTTACTTGTGAAAGTTATTGATAGAATATTG
TATAAACTTGATGACTTGGTGCGGCCGTATGTGCACAAGATTCTTGTGGTTATCGAGCCACTGTTGATTG
ATGAAGATTACTATGCTAGAGTGGAAGGCCGAGAGATTATTTCTAATTTGGCAAAGGCTGCTGGTCTGGC
TACTATGATTTCTACCATGAGACCTGATATAGATAACATGGATGAATATGTCCGAAACACAACAGCTAGA
GCTTTTGCTGTCGTAGCCTCTGCCCTGGGCATCCCTTCTTTATTGCCTTTCTTAAAAGCTGTGTGCAAAA
GCAAGAAGTCTTGGCAAGCGAGGCACACTGGTATTAAGATTGTACAACAGATAGCCATTCTCATGGGCTG
TGCTATCTTGCCACATCTCAGAAGTTTGGTTGAAATCATTGAACATGGTCTCGTGGATGAGCAGCAGAAA
GTTCGGACCATCAGTGCTCTGGCCATTGCTGCTTTGGCTGAGGCAGCAACTCCTTATGGTATTGAGTCTT
TTGATTCTGTGCTCAAGCCCCTATGGAAGGGTATCCGCCAACACAGAGGAAAGGGTCTGGCTGCTTTCTT
GAAGGCTATTGGGTATCTTATTCCTCTTATGGATGCAGAATATGCCAACTACTATACTAGAGAAGTGATG
TTAATCCTCATTCGAGAATTTCAGTCTCCTGATGAAGAAATGAAGAAAATTGTTTTGAAGGTGGTGAAAC
AGTGTTGTGGAACTGATGGTGTAGAAGCAAACTACATTAAAACAGAGATTCTTCCACCTTTCTTTAAACA
CTTTTGGCAACACAGAATGGCTTTGGATAGAAGAAATTACCGACAGTTAGTTGATACAACTGTGGAGTTG
GCAAACAAAGTAGGTGCAGCAGAGATCATATCTAGGATTGTTGATGATCTGAAGGATGAAGCTGAGCAGT
ACAGGAAAATGGTGATGGAAACAATTGAGAAAATTATGGGTAATCTAGGCGCAGCAGATATTGACCATAA
ACTTGAGGAACAACTGATTGATGGTATTCTCTATGCTTTCCAAGAACAGACTACAGAGGATTCAGTAATG
TTGAATGGCTTTGGCACAGTAGTTAATGCTCTTGGCAAACGAGTCAAACCATACTTGCCTCAGATCTGTG
GTACAGTTTTATGGCGTTTAAATAACAAATCAGCAAAAGTTAGGCAACAAGCAGCTGACTTGATTTCTCG
AACTGCTGTTGTTATGAAGACTTGTCAAGAGGAAAAACTGATGGGGCACTTGGGTGTGGTGCTGTATGAA
TATTTGGGTGAAGAGTACCCTGAAGTATTGGGCAGCATTCTTGGAGCACTGAAGGCTATTGTAAACGTAA
TAGGTATGCATAAGATGACACCACCAATTAAAGATCTCCTGCCTAGACTCACCCCCATTTTAAAGAACAG
ACATGAAAAAGTACAAGAGAATTGTATTGATCTTGTTGGACGCATTGCTGACAGGGGAGCTGAATATGTA
TCTGCAAGAGAATGGATGAGGATTTGCTTTGAGCTTTTAGAGCTCTTAAAAGCTCACAAAAAAGCTATTC
GAAGAGCTACCGTCAATACATTTGGTTATATCGCAAAGGCTATTGGCCCTCATGATGTATTGGCTACACT
TTTAAACAACCTCAAAGTTCAGGAAAGGCAGAACAGGGTTTGTACGACTGTAGCCATAGCCATTGTTGCT
GAAACATGCTCCCCCTTCACAGTACTGCCTGCCTTAATGAATGAATACAGAGTTCCTGAACTTAATGTGC
AAAATGGAGTGTTAAAATCACTCTCCTTCTTGTTTGAGTATATCGGCGAAATGGGGAAAGACTACATCTA
TGCTGTGACGCCTTTACTTGAGGATGCGTTAATGGACAGGGACCTTGTTCACAGACAGACAGCGAGTGCA
GTGGTGCAGCACATGTCACTTGGTGTTTACGGATTTGGCTGTGAGGATTCTCTGAATCACTTACTGAACT
ATGTGTGGCCTAATGTGTTTGAGACATCTCCCCATGTAATCCAGGCAGTTATGGGAGCTCTGGAGGGCCT
GAGGGTTGCTATTGGACCATGCAGAATGTTGCAGTATTGCTTACAGGGTCTGTTCCACCCAGCTCGGAAA
GTCAGAGACGTATATTGGAAAATTTACAACTCCATCTACATTGGCTCCCAGGATGCTCTCATAGCACATT
ACCCACGAATCTACAATGACGATAAGAACACCTATATTCGTTACGAACTTGACTATATCTTGTAA

Translation (1304 aa):
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDY
SSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGG
KTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGA
TPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPG
HGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGST
PVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPE
EQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRIL
YKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTAR
AFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQK
VRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVM
LILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVM
LNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYE
YLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYV
SAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA
ETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA
VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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