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Report for CCDS56773.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56773.2 Public Mus musculus 11 Or2t49 23 108 98 CCDS HistoryNCBI Gene:100502887Re-query CCDS DB by CCDS ID:56773.2Re-query CCDS DB by GeneID:100502887See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 56773.1
The coding region has been updated to extend the N-terminus to one that is more supported by paralogous protein data.

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 56773.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081743.2 ENSMUSP00000080440.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081743.2Link to Ensembl Protein Viewer:ENSMUSP00000080440.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000081743Re-query CCDS DB by Protein ID:ENSMUSP00000080440
Original member Current member NCBI NM_001011861.3 NP_001011861.3 Accepted alive Link to Nucleotide Sequence:NM_001011861.3Link to Protein Sequence:NP_001011861.3Re-query CCDS DB by Nucleotide ID:NM_001011861Re-query CCDS DB by Protein ID:NP_001011861Link to BLAST:NP_001011861.3

Chromosomal Locations for CCDS 56773.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58501598 58502572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGACCTCACCACCTGGATGAACAACTACACTACACAGTCAGATTTCACCCTGGTGGGATTCTTCAGTC
AATCCAAACACCCTGCCCTGCTTGCTGTGGTCATATTTGTGGTTTTCCTGATGGCCTTGTCTGGGAACGC
CCTCCTGATCCTGCTGATACTCTCTGACATCCACATACCAATCCACCTCCACATACCAATGTACTTTTTT
ATCAGCCAGCTGTCCCTCATGGACATGATGTACATTTCTGTCACTGTGCCCAAGATGCTCATGGACCAGG
TCCTGGGGAGCCACAAGATCTCAGCTGCTGCCTGTGGGATGCAGATGTTCCTCTACCTGACATTAGCAGG
GTCAGAATATTTCCTTCTTGCTGCCATGTCCTATGACCACTATGTGGCCATCTGTCATCCACTCCAGTAT
CCTGTCCTCATGAACCACAGGGTGTGTCTCCTGCTGATGTCTGTCTGTTGGATCCTGGGATCCTTGGATG
GCTTCATGTTCACCCCTGTCACCATGACCTTCCCATTCTGTGGATCCCGGGAGATCCATCACTTCTTCTG
TGAGGTCCCTGCTGTGACAAAGCTCTCCTGCTCAGACACCTGGCTCTATGAGACCCTCATGTATGTGTGC
TGTGTGCTCATGCTTCTCATCCCTGTGACAGTCATTTCAGGCTCCTATACATCCATCCTCCTCACTGTTC
TCAGGATGAACTCAGCAGAGGGCAGGAAGAAGGCCCTTGCCACCTGCTCCTCCCACATGACTGTGGTCAC
CCTCTACTATGGTGCTGCTATCTATACCTACATTTTCCCTGCCTCTCTCCACACCCCTGAGAAGGACATG
GTGGTGTCTATGTTTTACACCATACTCACCCCTCTGTTGAACCCACTAATCTATAGTTTTAGGAATAAGA
ATGTCACAGAGGCTATGAAGAAACTGTTAGGTGTGAGCACCCTCTTTCAAGAAACAGTAAAGTAA

Translation (324 aa):
MDLTTWMNNYTTQSDFTLVGFFSQSKHPALLAVVIFVVFLMALSGNALLILLILSDIHIPIHLHIPMYFF
ISQLSLMDMMYISVTVPKMLMDQVLGSHKISAAACGMQMFLYLTLAGSEYFLLAAMSYDHYVAICHPLQY
PVLMNHRVCLLLMSVCWILGSLDGFMFTPVTMTFPFCGSREIHHFFCEVPAVTKLSCSDTWLYETLMYVC
CVLMLLIPVTVISGSYTSILLTVLRMNSAEGRKKALATCSSHMTVVTLYYGAAIYTYIFPASLHTPEKDM
VVSMFYTILTPLLNPLIYSFRNKNVTEAMKKLLGVSTLFQETVK


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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