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Report for CCDS36845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36845.1 Public Mus musculus 14 Il17rb 23 108 98 CCDS HistoryNCBI Gene:50905Re-query CCDS DB by CCDS ID:36845.1Re-query CCDS DB by GeneID:50905See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36845.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016110.12 ENSMUSP00000016110.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016110.12Link to Ensembl Protein Viewer:ENSMUSP00000016110.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000016110Re-query CCDS DB by Protein ID:ENSMUSP00000016110
Original member Current member NCBI NM_019583.3 NP_062529.2 Accepted alive Link to Nucleotide Sequence:NM_019583.3Link to Protein Sequence:NP_062529.2Re-query CCDS DB by Nucleotide ID:NM_019583Re-query CCDS DB by Protein ID:NP_062529Link to BLAST:NP_062529.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062529.2 499 Q9JIP3-1 499 100% 0 0

Chromosomal Locations for CCDS 36845.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 29996624 29997189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 29998009 29998104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 29999244 29999343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30000335 30000400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30000742 30000884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30002367 30002414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30003561 30003687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30004276 30004403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30006023 30006163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30006850 30006874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30008732 30008791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGTTGCTAGTGTTGCTGATCTTGGCTGCATCGTGCAGGAGCGCCCTGCCTCGAGAGCCGACTATTCAGT
GTGGCTCTGAGACAGGGCCATCTCCAGAGTGGATGGTCCAACACACACTCACTCCAGGAGACTTGAGGGA
CCTCCAAGTGGAACTCGTCAAGACAAGTGTGGCAGCAGAGGAGTTTTCAATTTTGATGAACATAAGCTGG
ATACTCCGGGCAGACGCCAGCATCCGCTTGTTGAAGGCCACCAAGATCTGCGTGAGTGGCAAAAACAACA
TGAATTCATACAGCTGTGTGAGGTGCAACTACACAGAGGCCTTCCAAAGCCAGACCAGACCTTCCGGCGG
CAAATGGACATTCTCCTATGTAGGCTTCCCTGTGGAGCTGAGCACTCTCTATCTCATCAGCGCCCATAAC
ATCCCCAATGCTAATATGAATGAGGACAGCCCTTCTTTGTCTGTGAACTTCACCTCGCCAGGCTGCCTAA
ACCACGTAATGAAATATAAAAAGCAGTGCACTGAGGCGGGAAGCCTGTGGGACCCAGACATCACTGCTTG
TAAAAAGAACGAGAAGATGGTTGAAGTGAATTTCACAACCAATCCCCTTGGAAACAGATACACGATTCTC
ATTCAACGGGACACGACATTGGGGTTTTCTAGAGTGCTGGAGAATAAACTGATGAGGACGTCTGTAGCCA
TCCCGGTGACTGAGGAGAGTGAAGGTGCGGTGGTTCAGCTGACCCCATATTTACATACCTGCGGCAATGA
CTGCATCCGACGCGAAGGGACAGTTGTGCTTTGCTCAGAGACAAGTGCTCCCATCCCTCCAGATGACAAC
AGACGCATGCTGGGAGGCTGGCTGCCTCTCTTCCTGGTGCTGCTGGTGGCTGTGTGGGTGCTGGCAGCTG
GGATCTACCTAACTTGGAGGCAAGGAAGGAGCACGAAGACGTCCTTTCCTATTTCCACCATGCTCCTGCC
CCTCATTAAGGTCCTGGTGGTTTATCCTTCTGAGATATGTTTCCATCACACCGTCTGTCGCTTCACTGAC
TTTCTTCAAAACTACTGCAGAAGTGAGGTCATCCTTGAAAAATGGCAGAAAAAGAAAATCGCCGAGATGG
GGCCGGTACAGTGGCTGACCACTCAGAAGCAAGCGGCAGATAAAGTGGTCTTCCTTCTTCCCAGTGACGT
CCCGACCCTTTGTGACAGTGCCTGTGGCCACAATGAGGGCAGCGCCAGGGAGAACTCTCAGGATCTGTTC
CCTCTTGCCTTTAACCTCTTTTGTAGTGATTTCAGCAGCCAGACGCATCTGCACAAATACCTGGTGGTCT
ATCTTGGGGGAGCAGACCTCAAAGGCGACTATAATGCCCTGAGTGTCTGCCCCCAATATCATCTCATGAA
GGACGCCACAGCTTTCCACACAGAACTTCTCAAGGCTACGCAGAGCATGTCAGTGAAGAAACGCTCACAA
GCCTGCCATGATAGCTGTTCACCCTTGTAG

Translation (499 aa):
MLLVLLILAASCRSALPREPTIQCGSETGPSPEWMVQHTLTPGDLRDLQVELVKTSVAAEEFSILMNISW
ILRADASIRLLKATKICVSGKNNMNSYSCVRCNYTEAFQSQTRPSGGKWTFSYVGFPVELSTLYLISAHN
IPNANMNEDSPSLSVNFTSPGCLNHVMKYKKQCTEAGSLWDPDITACKKNEKMVEVNFTTNPLGNRYTIL
IQRDTTLGFSRVLENKLMRTSVAIPVTEESEGAVVQLTPYLHTCGNDCIRREGTVVLCSETSAPIPPDDN
RRMLGGWLPLFLVLLVAVWVLAAGIYLTWRQGRSTKTSFPISTMLLPLIKVLVVYPSEICFHHTVCRFTD
FLQNYCRSEVILEKWQKKKIAEMGPVQWLTTQKQAADKVVFLLPSDVPTLCDSACGHNEGSARENSQDLF
PLAFNLFCSDFSSQTHLHKYLVVYLGGADLKGDYNALSVCPQYHLMKDATAFHTELLKATQSMSVKKRSQ
ACHDSCSPL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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