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Report for CCDS52568.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52568.1 Public Mus musculus 8 Borcs8 23 108 98 CCDS HistoryNCBI Gene:72368Re-query CCDS DB by CCDS ID:52568.1Re-query CCDS DB by GeneID:72368See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52568.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002418.14 ENSMUSP00000002418.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002418.14Link to Ensembl Protein Viewer:ENSMUSP00000002418.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000002418Re-query CCDS DB by Protein ID:ENSMUSP00000002418
Original member Current member NCBI NM_001145552.2 NP_001139024.1 Accepted alive Link to Nucleotide Sequence:NM_001145552.2Link to Protein Sequence:NP_001139024.1Re-query CCDS DB by Nucleotide ID:NM_001145552Re-query CCDS DB by Protein ID:NP_001139024Link to BLAST:NP_001139024.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139024.1 120 Q9D6Y4 120 100% 0 0

Chromosomal Locations for CCDS 52568.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70139736 70139772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70141864 70141976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70142474 70142538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70145024 70145134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70145811 70145847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (363 nt):
ATGGAAGAACCTGAGATGCAGCTGAAGGGAAAGAAAGTCACAGACAAGTTCACCGAGAGTGTCTATGTCC
TTGCCAACGAGCCGTCAGTGGCCCTGTACCGGCTACAGGAACATGTGCGCCGTTCACTGCCAGAGCTGGC
CCAGCACAAGGCTGACATGCAGAGATGGGAAGAGCAGAGCCAGGGCGCCATATACACCGTGGAGTACGCC
TGCAGTGCTGTGAAGAGCTTGGTGGACAGCAGCGTGTACTTCCGTAGTGTGGAAGGCCTGCTCAAACAGG
CCATCAGTATCCGGGACCACATGAACACCAGTGCCCAAGGCCACAGCCAGGAGAAACTGTCCCCTCCTCC
TTCCCTGGCCTGA

Translation (120 aa):
MEEPEMQLKGKKVTDKFTESVYVLANEPSVALYRLQEHVRRSLPELAQHKADMQRWEEQSQGAIYTVEYA
CSAVKSLVDSSVYFRSVEGLLKQAISIRDHMNTSAQGHSQEKLSPPPSLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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