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Report for CCDS17478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17478.1 Public Mus musculus 3 Lamtor2 23 108 98 CCDS HistoryNCBI Gene:83409Re-query CCDS DB by CCDS ID:17478.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17478.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029698.14 ENSMUSP00000029698.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029698.14Link to Ensembl Protein Viewer:ENSMUSP00000029698.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029698Re-query CCDS DB by Protein ID:ENSMUSP00000029698
Original member Current member NCBI NM_031248.4 NP_112538.1 Accepted alive Link to Nucleotide Sequence:NM_031248.4Link to Protein Sequence:NP_112538.1Re-query CCDS DB by Nucleotide ID:NM_031248Re-query CCDS DB by Protein ID:NP_112538Link to BLAST:NP_112538.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112538.1 125 Q9JHS3 125 100% 0 0

Chromosomal Locations for CCDS 17478.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88549948 88550004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88550696 88550785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88552355 88552517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88552796 88552863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGCTGCGTCCCAAGGCTTTGACGCAGGTGCTAAGCCAAGCCAACACTGGAGGAGTCCAGAGCACCCTGC
TGCTGAATAATGAGGGATCGCTGCTGGCCTACTCCGGTTATGGGGACACAGATGCCCGGGTCACTGCGGC
CATCGCCAGTAACATCTGGGCCGCGTATGATAGGAACGGGAACCAAGCGTTTAATGAAGACAGTCTCAAA
TTTATCCTGATGGACTGCATGGAGGGCCGTGTAGCCATTACGAGGGTGGCCAACCTTCTGCTATGTATGT
ATGCCAAGGAGACCGTAGGCTTCGGAATGCTCAAGGCTAAGGCCCAGGCCCTGGTGCAGTACCTGGAGGA
ACCCCTCACCCAAGTAGCAGCATCATAA

Translation (125 aa):
MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLK
FILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQVAAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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