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Report for CCDS30964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30964.1 Public Homo sapiens 1 DDX59 24 110 108 CCDS HistoryNCBI Gene:83479Re-query CCDS DB by CCDS ID:30964.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30964.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331314.11 ENSP00000330460.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331314.11Link to Ensembl Protein Viewer:ENSP00000330460.6Re-query CCDS DB by Nucleotide ID:ENST00000331314Re-query CCDS DB by Protein ID:ENSP00000330460
Original member Current member NCBI NM_001031725.6 NP_001026895.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001031725.6Link to Protein Sequence:NP_001026895.2Re-query CCDS DB by Nucleotide ID:NM_001031725Re-query CCDS DB by Protein ID:NP_001026895Link to BLAST:NP_001026895.2
Original member Current member NCBI NM_001349799.3 NP_001336728.1 Accepted alive Link to Nucleotide Sequence:NM_001349799.3Link to Protein Sequence:NP_001336728.1Re-query CCDS DB by Nucleotide ID:NM_001349799Re-query CCDS DB by Protein ID:NP_001336728Link to BLAST:NP_001336728.1
Original member Current member NCBI NM_001349800.3 NP_001336729.1 Accepted alive Link to Nucleotide Sequence:NM_001349800.3Link to Protein Sequence:NP_001336729.1Re-query CCDS DB by Nucleotide ID:NM_001349800Re-query CCDS DB by Protein ID:NP_001336729Link to BLAST:NP_001336729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026895.2 619 Q5T1V6-1 619 100% 0 0
NP_001336728.1 619 Q5T1V6-1 619 100% 0 0
NP_001336729.1 619 Q5T1V6-1 619 100% 0 0

Chromosomal Locations for CCDS 30964.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 200644254 200644517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200648439 200648567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200649074 200649226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200650425 200650676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200659027 200659116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200663919 200664086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 200665937 200666740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGTTTGTTCCAAGATCTCTAAAAATCAAGAGGAATGCTAATGATGATGGCAAAAGTTGTGTGGCTAAGA
TAATTAAACCAGACCCAGAAGACCTTCAGTTGGACAAAAGCAGAGATGTTCCCGTTGATGCTGTAGCTAC
AGAAGCAGCCACAATAGACAGGCACATCAGCGAATCATGCCCTTTCCCCAGCCCAGGTGGCCAGTTGGCA
GAGGTTCATTCAGTAAGTCCCGAGCAGGGTGCGAAGGACAGCCATCCTTCTGAAGAGCCCGTTAAGTCAT
TTTCCAAAACACAGCGCTGGGCAGAACCAGGGGAACCCATCTGTGTTGTCTGTGGTCGTTATGGAGAGTA
TATCTGTGATAAGACAGATGAAGATGTGTGTAGTTTGGAGTGTAAAGCGAAACATCTTCTACAAGTTAAG
GAAAAGGAAGAGAAATCAAAACTCAGCAATCCACAGAAGGCTGATTCTGAGCCAGAGTCTCCACTGAATG
CTTCCTATGTCTACAAAGAGCACCCCTTTATTTTGAACCTTCAGGAAGACCAGATTGAAAATCTTAAACA
GCAGCTGGGAATTTTAGTTCAAGGGCAAGAAGTCACCAGGCCCATTATTGACTTTGAACATTGTAGTCTC
CCTGAGGTCTTAAATCACAACTTGAAGAAATCAGGCTATGAGGTGCCAACTCCCATTCAAATGCAGATGA
TTCCTGTGGGACTTCTGGGAAGAGACATTCTGGCCAGTGCAGATACTGGCTCAGGAAAAACAGCTGCTTT
TCTTCTTCCTGTTATCATGCGAGCTTTATTCGAGAGCAAAACTCCATCTGCGCTCATTCTTACACCAACC
AGAGAGTTAGCCATTCAGATAGAGAGACAAGCTAAAGAATTGATGAGTGGCCTGCCACGCATGAAAACTG
TGCTTCTTGTAGGGGGCTTACCCTTACCCCCACAGCTTTATCGTCTGCAACAACATGTTAAGGTTATCAT
AGCAACCCCTGGGCGACTTCTGGATATAATAAAGCAGAGCTCTGTAGAACTCTGTGGTGTAAAGATTGTG
GTAGTAGATGAAGCTGATACCATGTTAAAGATGGGTTTTCAACAACAAGTGCTTGACATTTTGGAAAACA
TTCCTAATGATTGTCAGACCATTTTGGTTTCAGCCACAATTCCAACTAGCATAGAACAGCTAGCAAGCCA
GCTTCTGCATAATCCTGTGAGAATTATCACTGGAGAAAAGAACCTACCTTGTGCCAATGTACGTCAGATT
ATTTTGTGGGTAGAAGACCCAGCCAAAAAGAAAAAATTATTTGAAATTTTAAATGATAAGAAACTCTTTA
AGCCTCCAGTGTTAGTATTTGTGGACTGCAAACTAGGAGCAGATCTTTTGAGTGAAGCCGTTCAGAAAAT
CACAGGGCTGAAAAGCATATCTATACATTCAGAGAAGTCGCAAATAGAAAGGAAAAACATATTGAAGGGA
TTACTTGAAGGAGACTATGAAGTTGTAGTGAGCACAGGAGTCTTGGGACGAGGCCTAGACTTGATCAGTG
TCAGGCTGGTTGTCAATTTTGATATGCCTTCAAGTATGGATGAGTATGTCCATCAGATTGGAAGAGTAGG
AAGATTAGGTCAAAATGGAACAGCGATTACTTTCATCAATAATAATTCAAAAAGACTCTTCTGGGATATT
GCAAAACGAGTAAAGCCCACAGGATCCATTCTTCCCCCTCAGTTATTAAATTCCCCATACCTTCATGACC
AGAAGAGAAAGGAACAACAGAAAGATAAACAGACACAGAATGATCTGGTTACAGGAGCTAATCTTATGGA
TATTATCAGAAAACATGATAAAAGTAATTCTCAGAAATGA

Translation (619 aa):
MFVPRSLKIKRNANDDGKSCVAKIIKPDPEDLQLDKSRDVPVDAVATEAATIDRHISESCPFPSPGGQLA
EVHSVSPEQGAKDSHPSEEPVKSFSKTQRWAEPGEPICVVCGRYGEYICDKTDEDVCSLECKAKHLLQVK
EKEEKSKLSNPQKADSEPESPLNASYVYKEHPFILNLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSL
PEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESKTPSALILTPT
RELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIV
VVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQI
ILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKG
LLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDI
AKRVKPTGSILPPQLLNSPYLHDQKRKEQQKDKQTQNDLVTGANLMDIIRKHDKSNSQK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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